View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9699_low_4 (Length: 344)
Name: NF9699_low_4
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 56168950 - 56169285
Alignment:
| Q |
1 |
acattttgctactgatgcttaggagcctaatatgtgcggctatatataggatcgtgtataaagttcaattaaggcattccttttgtcctgatatcattgt |
100 |
Q |
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| T |
56168950 |
acattttactagtgatgcttaggagcctaatatgtgcggttatatataggatcgtgtataaagttcaattaaggcattccttttgtcctgatatcattgt |
56169049 |
T |
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| Q |
101 |
cattgctattgttatgcctgactagagttgctacctgtttattatatttctaacaagaattgataattttagatgacaatcttttgattggtcttgttat |
200 |
Q |
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| T |
56169050 |
cattgctattgttatggctgactagagttgctacctgtttattatatttctaacaagaattgataattttagatgacaatcttttgattggtcttgttat |
56169149 |
T |
|
| Q |
201 |
ttggcattaacgtttgtcttatgcctattatgatataatgctttttatcatttaactttagtgtttgtcttttatgattttgtttatcactttctctagg |
300 |
Q |
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| T |
56169150 |
ttggcattaacgtttgtcttatgcctattatgatataatgctttttatcatttcactttagtgtttgtcttttatgattttgtttatcactttctctagg |
56169249 |
T |
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| Q |
301 |
ctgtgctaacctattttatgtaaatttgctgatgtc |
336 |
Q |
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| T |
56169250 |
ctgtgctaacctattttatgtaaatttgctgatgtc |
56169285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 706762 - 706522
Alignment:
| Q |
3 |
attttgctactgatgcttaggagcctaatatgtgcggctatatataggatcgtgtataaagttcaattaaggcattccttttgtcctgatatcattgtca |
102 |
Q |
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| T |
706762 |
attttgcaagtgatgcttaggagcctaatatgtgcgattatatataggatcttgtatgaaattcaattaaggcattccttttgtcctgatatcattgcca |
706663 |
T |
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| Q |
103 |
ttgctattgttatgcctgactagagttgctacctgtttattatatttctaacaagaattgataattttagatgacaatcttttgattggtcttgttattt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
706662 |
ttgctattgttatgcctgactagagttgctacctgtttattatatttctaacaagaattgatagttttagatgacaatcttttgattggtcttgttattt |
706563 |
T |
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| Q |
203 |
ggcattaacgtttgtcttatgcctattatgatataatgctt |
243 |
Q |
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|| |||| ||||| |||||| |||||||||||||||||| |
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| T |
706562 |
ggtgttaatctttgttttatgcttattatgatataatgctt |
706522 |
T |
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