View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9699_low_5 (Length: 323)

Name: NF9699_low_5
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9699_low_5
NF9699_low_5
[»] chr2 (1 HSPs)
chr2 (18-311)||(13591298-13591591)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 13591591 - 13591298
Alignment:
Q  18 ctaatctcttctctaagctccactttcaatccaaggcttttataaataatctcttccactgaatcatgatcgtactcttctctgtagaacgagagatcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13591591 ctaatctcttctctaagctccactttcaatccaaggcttttataaataatctcttccactgaatcatgatcgtactcttctctgtagaacgagagatcta 13591492  T
Q  118 aaggatctctatgaatctccaaacagtgcttcgatgacttaagcatgtttcgtagcatggggttcttaaacctaatgaatccgcagtgccgattcagaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13591491 aaggatctctatgaatctccaaacagtgcttcgatgacttaagcatgtttcgtagcatggggttcttaaacctaatgaatccgcagtgccgattcagaag 13591392  T
Q  218 gaaatcacggaggttttggggtatggaatctgcatgacctagttggaatataaggcaccggttaccggtgcagagttgcaaagtgtctgcccta 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13591391 gaaatcacggaggttttgcggtatggaatctgcatgacctagttggaatataaggcaccggttaccggtgcagagttgcaaagtgtctgcccta 13591298  T

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