View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9699_low_6 (Length: 323)
Name: NF9699_low_6
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 36701983 - 36701811
Alignment:
| Q |
16 |
cataaataatatgtaaaaatgtgatcatctaatgtgatacatattgctaggtataataaatcttcagagaatgaatccacctatgcttgtttagcatttg |
115 |
Q |
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| T |
36701983 |
cataaataatgtgtaaaaatgtgatcatctaatgtgatacatattgctaggtataataaatcttcagagaatgaatccacctatgcttgtttagcatttg |
36701884 |
T |
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| Q |
116 |
tggaattaagtcctactatctcatgatttgaatcagcaaattataaacaaccataaataagacagaaattgtt |
188 |
Q |
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| T |
36701883 |
tggaattaagtcctactatctcatgatttgaatcagcaaattataaacaaccataaataagacagaaattgtt |
36701811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 36701352 - 36701237
Alignment:
| Q |
197 |
aataattagacagaaatgcctccattgtacataaataacnnnnnnnnn-gttacgtacatagataacttatgcctacgttatgtatttattaaattgttt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36701352 |
aataattagacagaaatgcctccattgtacataaataacttctttttttgttacgtacatagataacttatgcctacgttatgtatttattaaattgttt |
36701253 |
T |
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| Q |
296 |
aataaatagctcccta |
311 |
Q |
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|||||||||||||||| |
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| T |
36701252 |
aataaatagctcccta |
36701237 |
T |
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