View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9700_high_1 (Length: 428)
Name: NF9700_high_1
Description: NF9700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9700_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 24430977 - 24431366
Alignment:
| Q |
19 |
agaatcaacctcgtcctaattcttctaggctggtgcttgcaactgtttcctctgccaatgaatctctagaagcctctcaacgtgctttctctgcgactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24430977 |
agaatcaacctcgtcctaattcttctaggccggtgcttgcaactgtttcctctgccaatgaatctctagaagcctctcaacgtgctttctctgcgactga |
24431076 |
T |
|
| Q |
119 |
ccttgaatccatccttagacaacttcttccatctggtaatggtaatactcatacagctctttccaccacaccaggtaattctaaatggtatttagattct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24431077 |
ccttgaatccatccttagacaacttcttccatctggtaacggtaatactcatgcagctctttccaccacaccaggtaattctaaatggtatttagattct |
24431176 |
T |
|
| Q |
219 |
gcctgttgtaaccacatgacatcttcatcccatcttttttcatctttatctgaaaatatcactactcattctatccacacagctgatgggtctcttatgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24431177 |
gcctgttgtaaccacatgacatcttcatcccatcttttttcatctttatctgaaaatatcactactcattctatccacacagttgatgggtctcttatgc |
24431276 |
T |
|
| Q |
319 |
ctgtaagtcataagggttctatatccttatctaatctaagcttacctgatacatatcacatcccaaaactaaactttaatcttatctctg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24431277 |
ctgtaagtcataagggttctatatccttatctaatctaagcttacttgatacatatctcatcccaaaactaaactttaatcttatctctg |
24431366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 16502144 - 16502265
Alignment:
| Q |
287 |
ttctatccacacagctgatgggtctcttatgcctgtaagtcataagggttctatatccttatctaatctaagcttacctgatacatatcacatcccaaaa |
386 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||| |||||||| ||| |||||||| ||||| ||||| ||||||||| ||||| ||| |
|
|
| T |
16502144 |
ttctatccacactgctgatggatctcttatgcatgtaagtcatacaggttctatctccctatctaatttaagcctacctaatacatatctaatccctaaa |
16502243 |
T |
|
| Q |
387 |
ctaaactttaatcttatctctg |
408 |
Q |
| |
|
||||| ||||| |||||||||| |
|
|
| T |
16502244 |
ctaaattttaaacttatctctg |
16502265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 16502039 - 16502123
Alignment:
| Q |
158 |
tggtaatactcatacagctctttccaccacaccaggtaattctaaatggtatttagattctgcctgttgtaaccacatgacatct |
242 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||||| |
|
|
| T |
16502039 |
tggtaatactctggccgctctttctaccacaccaggtaattctaaatggtattttgactctacatgttgtaaccatatgacatct |
16502123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 24432999 - 24432951
Alignment:
| Q |
19 |
agaatcaacctcgtcctaattcttctaggctggtgcttgcaactgtttc |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24432999 |
agaatcaacctcgtcctaattcttctaggccggtgcttgcaactgtttc |
24432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 17450026 - 17450415
Alignment:
| Q |
19 |
agaatcaacctcgtcctaattcttctaggctggtgcttgcaactgtttcctctgccaatgaatctctagaagcctctcaacgtgctttctctgcgactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17450026 |
agaatcaacctcgtcctaattcttctaggccggtgcttgcaactgtttcctctgccaatgaatctctagaagcctctcaacgtgctttctctgcgactga |
17450125 |
T |
|
| Q |
119 |
ccttgaatccatccttagacaacttcttccatctggtaatggtaatactcatacagctctttccaccacaccaggtaattctaaatggtatttagattct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17450126 |
ccttgaatccatccttagacaacttcttccatctggtaacggtaatactcatgcagctctttccaccacaccaggtaattctaaatggtatttagattct |
17450225 |
T |
|
| Q |
219 |
gcctgttgtaaccacatgacatcttcatcccatcttttttcatctttatctgaaaatatcactactcattctatccacacagctgatgggtctcttatgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17450226 |
gcctgttgtaaccacatgacatcttcatcccatctttttacatctttatctgaaaatatcactactcattctatccacacagttgatgggtctcttatgc |
17450325 |
T |
|
| Q |
319 |
ctgtaagtcataagggttctatatccttatctaatctaagcttacctgatacatatcacatcccaaaactaaactttaatcttatctctg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17450326 |
ctgtaagtcataagggttctatatccttatctaatctaagcttacttgatacatatctcatcccaaaactaaactttaatcttatctctg |
17450415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17452048 - 17452000
Alignment:
| Q |
19 |
agaatcaacctcgtcctaattcttctaggctggtgcttgcaactgtttc |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17452048 |
agaatcaacctcgtcctaattcttctaggccggtgcttgcaactgtttc |
17452000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 389
Target Start/End: Original strand, 14824938 - 14825126
Alignment:
| Q |
201 |
aaatggtatttagattctgcctgttgtaaccacatgacatcttcatcccatcttttttcatctttatctgaaaatatcactactcattctatccacacag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| | |||| || | ||||| ||| | ||| ||||| || || ||||||||||||| |
|
|
| T |
14824938 |
aaatggtatttagattctgcctgttgtaatcacataacatatgcatctcacttgttttcttctgtgtctaaaaatgacatccctaattctatccacacta |
14825037 |
T |
|
| Q |
301 |
ctgatgggtctcttatgcctgtaagtcataagggttctatatccttatctaatctaagcttacctgatacatatcacatcccaaaacta |
389 |
Q |
| |
|
|| ||||||||||||||| ||| ||||| ||||||| || || |||||| |||||||| |||| ||||||| ||| || |||||| |
|
|
| T |
14825038 |
ttgtcgggtctcttatgcctttaatccataaaggttctaactcgttgtctaatttaagcttaactgagacatatctcattcctaaacta |
14825126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 408
Target Start/End: Complemental strand, 53018181 - 53017947
Alignment:
| Q |
174 |
gctctttccaccacaccaggtaattctaaatggtatttagattctgcctgttgtaaccacatgacatcttcatcccatcttttttcatctttatctgaaa |
273 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| | |||||||| |||||||||||||||||||| ||||| || | ||||| || |||| ||| |
|
|
| T |
53018181 |
gctctttccactacaccagataattctaaatggtatcttgattctgcatgttgtaaccacatgacatcatcatcttatttattttcttccctatcaaaaa |
53018082 |
T |
|
| Q |
274 |
atatcactactcattctatccacacagctgatgggtctcttatgcctgtaagtcataagggttctatatccttatctaatctaagcttacctgatacata |
373 |
Q |
| |
|
|| || || || |||||||||||| || | ||| |||||||||| ||||| |||| |||||||| ||| | |||||| ||||| ||||| ||||||| |
|
|
| T |
53018081 |
atgacattaatccttctatccacaccgccggtggatctcttatgcacgtaagccatacaggttctatctccctctctaatttaagcctacctaatacata |
53017982 |
T |
|
| Q |
374 |
tcacatcccaaaactaaactttaatcttatctctg |
408 |
Q |
| |
|
|| ||||| ||||| |||||||| |||||||||| |
|
|
| T |
53017981 |
tcttatccctaaactcaactttaaccttatctctg |
53017947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University