View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9700_high_2 (Length: 364)
Name: NF9700_high_2
Description: NF9700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9700_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 364
Target Start/End: Complemental strand, 26080478 - 26080121
Alignment:
| Q |
6 |
tcaatgcagcttaccagaggggaagggacaagaaatgttaccaaatatacccttttaaatctgactcatcagttaaacaaattaaatctaatggtaaata |
105 |
Q |
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| T |
26080478 |
tcaatgcagcttaccagaggggaagggacaagaaatgttaccaaatatacccttttaaatctgactcatcagttaaacaaattaaatctaatggtaaata |
26080379 |
T |
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| Q |
106 |
agtgatggaggaccggtacacccttttacataggtatgccttaaatgtggcctaaaaaacattctattactctaaattatgtttagcatattcaccatgc |
205 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26080378 |
agtgatggag-atcggtacacccttttacataggtatgccttaaatgtggcctaaaaaacattctattactctaaattatgtttagcatgttcaccatgc |
26080280 |
T |
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| Q |
206 |
gattctgtcatagttcaaactgaatattcatgcaactttagcataatgaggcccaaccacaaccctataagaatagcagttctcatgcgtcagttgcata |
305 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
26080279 |
gattctgtcacagttcatactgaatattcatgcaactttagcataatgaggcccaaccacaaccctataagaataacagttctcatgtgtcagttgcata |
26080180 |
T |
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| Q |
306 |
caatcgttgagctctcagaattttggataggtcttacctaacacgatccaatagtttgc |
364 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
26080179 |
caatcgttgagctctcagaattttggataggtctgacctaacacgatccaaaagtttgc |
26080121 |
T |
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