View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9700_low_2 (Length: 417)

Name: NF9700_low_2
Description: NF9700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9700_low_2
NF9700_low_2
[»] chr4 (11 HSPs)
chr4 (28-403)||(2801813-2802186)
chr4 (42-403)||(1678632-1678994)
chr4 (303-353)||(21606595-21606645)
chr4 (309-353)||(7367561-7367605)
chr4 (305-353)||(27131676-27131724)
chr4 (318-361)||(21886432-21886475)
chr4 (312-350)||(9018880-9018918)
chr4 (319-361)||(21886517-21886559)
chr4 (309-363)||(22402381-22402435)
chr4 (311-349)||(41052607-41052645)
chr4 (309-353)||(25260541-25260585)
[»] chr3 (5 HSPs)
chr3 (310-355)||(2401481-2401526)
chr3 (310-353)||(35335609-35335652)
chr3 (309-353)||(33331951-33331995)
chr3 (318-363)||(651410-651455)
chr3 (305-353)||(36895369-36895417)
[»] chr8 (6 HSPs)
chr8 (309-353)||(16330989-16331033)
chr8 (305-363)||(30921011-30921068)
chr8 (311-353)||(3943758-3943800)
chr8 (312-353)||(9581882-9581923)
chr8 (309-353)||(6501503-6501546)
chr8 (313-353)||(11556955-11556995)
[»] chr6 (13 HSPs)
chr6 (309-353)||(34443051-34443095)
chr6 (309-354)||(8805968-8806013)
chr6 (295-348)||(32862750-32862803)
chr6 (305-353)||(2468476-2468524)
chr6 (309-361)||(4240921-4240973)
chr6 (310-353)||(5663937-5663980)
chr6 (305-351)||(29670903-29670948)
chr6 (309-354)||(7086409-7086454)
chr6 (314-351)||(12630070-12630107)
chr6 (311-363)||(4323105-4323157)
chr6 (309-353)||(8013845-8013889)
chr6 (311-351)||(34406440-34406480)
chr6 (305-353)||(34443439-34443486)
[»] chr7 (1 HSPs)
chr7 (307-353)||(27531846-27531892)
[»] chr5 (5 HSPs)
chr5 (313-358)||(29587683-29587728)
chr5 (309-353)||(26208013-26208057)
chr5 (305-352)||(25734621-25734668)
chr5 (312-353)||(20407905-20407946)
chr5 (305-353)||(39828474-39828521)
[»] chr1 (5 HSPs)
chr1 (309-353)||(33318848-33318892)
chr1 (295-349)||(303693-303747)
chr1 (294-352)||(16567303-16567361)
chr1 (275-353)||(43328475-43328552)
chr1 (295-351)||(45462827-45462881)
[»] chr2 (1 HSPs)
chr2 (267-349)||(8518044-8518126)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Original strand, 2801813 - 2802186
Alignment:
Q  28 ctacatattatcaaatatcaataatctcaagcttaaataagatccaaaaggtatatagatttatactattttttcataaaattatattagatcatctgtc 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2801813 ctacatattatcaaatatcaataatctcaagcttaaataagatccaaaaggtatatagatttatactattttttcataaaattatattagatcatctgtc 2801912  T
Q  128 taaggagaaaatcaagtttaatatattatgatcttaagtgtaccaccttgtgcactattttggtcttttaccataaaaagaatggacaaactatcccatc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2801913 taaggagaaaatcaagtttaatatattatgatcttaagtgtaccaccttgtgcactattttggtcttttaccataaaaaaaatggacaaactatcccatc 2802012  T
Q  228 attaaggatcttaggctagtttagagtgaaggtgtgcccggtgtctaacatgtgtcggtgtcagaaaccaacaagataccaacacatgtggttacattta 327  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802013 attaaggatcttcggctagtttagagtgaaggtgtgcccggtgtctaacatatgtcggtgtcagaaaccaacaagataccaacacatgtggttacattta 2802112  T
Q  328 atcactttcattttctcaaattattagcggtatctaactgtcggtgttgtgttcaatgtttgtgtttgtgtctgtg 403  Q
    |||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2802113 atcactttcattctcccaaattattagcggtatctaactgtcggtg--gtgttcaatgtttgtgtttgtgtctgtg 2802186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 42 - 403
Target Start/End: Complemental strand, 1678994 - 1678632
Alignment:
Q  42 atatcaataatctcaagcttaaataagatccaaaaggtatatagatttatactattttttcataaaattatattagatcatctgtct-aaggagaaaatc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1678994 atatcaataatctcaagcttaaataagatccaaaaggtatatagatttatactattttttcataaaattatattagatcatctgtcttaaggagaaaatc 1678895  T
Q  141 aagtttaatatattatgatcttaagtgtaccaccttgtgcactattttggtcttttaccataaaaagaatggacaaactatcccatcattaaggatctta 240  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  1678894 aagtttaatatattatgatcttaagtgtaccaccttgtccaatattttggtcttttaccataaaaagaatggacaaactaccccatcattaaggatcttc 1678795  T
Q  241 ggctagtttagagtgaaggtgtgcccggtgtctaacatgtgtcggtgtcagaaaccaacaagataccaacacatgtggttacatttaatcactttcattt 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1678794 ggctagtttagagtgaaggtgtgcccggtgtctaacacgtgtcggtgtcagaaaccaacaagataccaacacatgtagttacatttaatcactttcattt 1678695  T
Q  341 tctcaaattattagcggtatctaactgtcggtgttgtgttcaatgtttgtgtttgtgtctgtg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1678694 tctcaaattattagcggtatctaactgtcggtgttgtgttcaatgtttgtgtttgtgtctgtg 1678632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 21606595 - 21606645
Alignment:
Q  303 ataccaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    |||||||||||||| |||||| ||||||||||| ||||||| |||||||||    
T  21606595 ataccaacacatgtagttacacttaatcacttttattttcttaaattatta 21606645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 7367605 - 7367561
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    |||||||||||||| || |||||| ||||||||||||||||||||    
T  7367605 acacatgtggttacgttcaatcaccttcattttctcaaattatta 7367561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 27131676 - 27131724
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||| ||| |||| |||||||| |||||||||    
T  27131676 accaacacatgtggttacattcaattacttccattttcttaaattatta 27131724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 21886475 - 21886432
Alignment:
Q  318 gttacatttaatcactttcattttctcaaattattagcggtatc 361  Q
    |||||||||||||||| |||||| |||||||||||| |||||||    
T  21886475 gttacatttaatcactgtcatttactcaaattattaccggtatc 21886432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 9018880 - 9018918
Alignment:
Q  312 catgtggttacatttaatcactttcattttctcaaatta 350  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  9018880 catgtggttacattcaattactttcattttctcaaatta 9018918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 21886559 - 21886517
Alignment:
Q  319 ttacatttaatcactttcattttctcaaattattagcggtatc 361  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||    
T  21886559 ttacattcaatcactatcattttctcaaattattaccggtatc 21886517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 22402435 - 22402381
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattattagcggtatcta 363  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||| |||| ||||    
T  22402435 acacatgtggttacattcaatcacttctattttctcaatttattaccggtctcta 22402381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 41052645 - 41052607
Alignment:
Q  311 acatgtggttacatttaatcactttcattttctcaaatt 349  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  41052645 acatgtggttacatttaattactttcattttcttaaatt 41052607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 25260585 - 25260541
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    |||||| |||||||||||||| |||| |||||||| |||||||||    
T  25260585 acacatttggttacatttaattacttccattttcttaaattatta 25260541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 2401481 - 2401526
Alignment:
Q  310 cacatgtggttacatttaatcactttcattttctcaaattattagc 355  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  2401481 cacatgtagttacatttaatcactttgattttctcaaattattagc 2401526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 35335652 - 35335609
Alignment:
Q  310 cacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  35335652 cacaagtggttgcatttaatcactttcattttctcaaattatta 35335609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 33331951 - 33331995
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||    
T  33331951 acacatgtaattacatttaatcacttttattttctcaaattatta 33331995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 651410 - 651455
Alignment:
Q  318 gttacatttaatcactttcattttctcaaattattagcggtatcta 363  Q
    |||||||||||||| ||||||||||||| |||||||| ||| ||||    
T  651410 gttacatttaatcaatttcattttctcatattattagtggtgtcta 651455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 36895417 - 36895369
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||| ||||||| ||||||||  ||||| |||||||||||    
T  36895417 accaacacatgtgattacattcaatcacttatattttatcaaattatta 36895369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 16331033 - 16330989
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  16331033 acacatgtggttacatttaatcattttcattttcttaaattatta 16330989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 30921068 - 30921011
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattattagcggtatcta 363  Q
    ||||||||||||| ||||||| ||||||||||||||| | |||||||||||||| ||||    
T  30921068 accaacacatgtgcttacattcaatcactttcatttt-taaaattattagcggtgtcta 30921011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 3943800 - 3943758
Alignment:
Q  311 acatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  3943800 acatgtggttacattcaatcacttttattttcttaaattatta 3943758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 9581923 - 9581882
Alignment:
Q  312 catgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||| |||||||||||||||||||||||| ||| |||||    
T  9581923 catgtggctacatttaatcactttcattttcttaaactatta 9581882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 6501546 - 6501503
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||    
T  6501546 acacatgtggttacatttaatta-tttcattctctcaaattatta 6501503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 11556955 - 11556995
Alignment:
Q  313 atgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  11556955 atgtggttacattcaatcacttaaattttctcaaattatta 11556995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 34443051 - 34443095
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  34443051 acacatgtggttacattcaatcactttcactttctcaaattatta 34443095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 8805968 - 8806013
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattattag 354  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||    
T  8805968 acacatgtggtttcattcaatcactttcaatttctcaaattattag 8806013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 32862750 - 32862803
Alignment:
Q  295 ccaacaagataccaacacatgtggttacatttaatcactttcattttctcaaat 348  Q
    ||||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||    
T  32862750 ccaacaagatactgacacacgtggttacattcaatcactttcattttcttaaat 32862803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 2468476 - 2468524
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||| ||| |||| |||||||| |||||||||    
T  2468476 accaacacatgtggttacattcaattacttccattttcttaaattatta 2468524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 4240921 - 4240973
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattattagcggtatc 361  Q
    ||||||| | |||||||| |||||||||||||||| ||||||||| |||||||    
T  4240921 acacatgcgattacatttcatcactttcattttcttaaattattaacggtatc 4240973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 5663937 - 5663980
Alignment:
Q  310 cacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||    
T  5663937 cacatgtggttacatttaatcacttccattttatcatattatta 5663980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 29670948 - 29670903
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattat 351  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||    
T  29670948 accaacacatgtggttacattgaatca-tgtcattttctcaaattat 29670903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 7086454 - 7086409
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattattag 354  Q
    |||||||||||| ||||  |||||||||| ||||||||||||||||    
T  7086454 acacatgtggtttcattccatcactttcaatttctcaaattattag 7086409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 12630070 - 12630107
Alignment:
Q  314 tgtggttacatttaatcactttcattttctcaaattat 351  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  12630070 tgtggttacattaaataactttcattttctcaaattat 12630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 4323157 - 4323105
Alignment:
Q  311 acatgtggttacatttaatcactttcattttctcaaattattagcggtatcta 363  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||| | |||||||    
T  4323157 acatgtggtaacatttaatcacttcaattttctcaaattgttatcagtatcta 4323105  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 8013845 - 8013889
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||| ||||||||  ||||| |||||||||||    
T  8013845 acacatgtggttacattcaatcacttatattttttcaaattatta 8013889  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 34406480 - 34406440
Alignment:
Q  311 acatgtggttacatttaatcactttcattttctcaaattat 351  Q
    |||| |||||||||| ||||||||||||||||| |||||||    
T  34406480 acatatggttacattcaatcactttcattttcttaaattat 34406440  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 34443439 - 34443486
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||| ||||||||||||| ||||| ||||||||| |||||||||||    
T  34443439 accaacaaatgtggttacattcaatcattttcatttt-tcaaattatta 34443486  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 27531846 - 27531892
Alignment:
Q  307 caacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||    
T  27531846 caacacatttgattacatttaatcactttcattttttcaaattatta 27531892  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 29587728 - 29587683
Alignment:
Q  313 atgtggttacatttaatcactttcattttctcaaattattagcggt 358  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||    
T  29587728 atgtggttacatttaatcacttccattttcttaaattattaccggt 29587683  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 26208013 - 26208057
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||| || |||||| |||||||||||||||||    
T  26208013 acacatgtggttacattcaaacacttttattttctcaaattatta 26208057  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 25734621 - 25734668
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattatt 352  Q
    ||||||| |||| |||| ||||||||||||||||||||||| ||||||    
T  25734621 accaacaaatgtagttatatttaatcactttcattttctcatattatt 25734668  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 20407946 - 20407905
Alignment:
Q  312 catgtggttacatttaatcactttcattttctcaaattatta 353  Q
    |||||| ||||||| ||||||||||||||| |||||||||||    
T  20407946 catgtgattacattcaatcactttcattttttcaaattatta 20407905  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 39828521 - 39828474
Alignment:
Q  305 accaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||| ||| | |||||| ||||||||||||||    
T  39828521 accaacacatgtggttacattcaatta-tttcatattctcaaattatta 39828474  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 33318892 - 33318848
Alignment:
Q  309 acacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||    
T  33318892 acacatgtggttacatttaatcactctcattttcttaagttatta 33318848  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 303747 - 303693
Alignment:
Q  295 ccaacaagataccaacacatgtggttacatttaatcactttcattttctcaaatt 349  Q
    |||||| |||||  |||| |||||||||||| ||| |||||||||||||||||||    
T  303747 ccaacacgatactgacacttgtggttacattcaattactttcattttctcaaatt 303693  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 16567361 - 16567303
Alignment:
Q  294 accaacaagataccaacacatgtggttacatttaatcactttcattttctcaaattatt 352  Q
    ||||||| |||||  ||||||||||||||||| ||||| || |||||||| ||||||||    
T  16567361 accaacacgatactgacacatgtggttacattcaatcatttccattttcttaaattatt 16567303  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 43328552 - 43328475
Alignment:
Q  275 acatgtgtcggtgtcagaaaccaacaagataccaacacatgtggttacatttaatcactttcattttctcaaattatta 353  Q
    ||||| ||||||||| || ||||||| || |   ||||||||||||||||| ||| | |||||||||||||||||||||    
T  43328552 acatgagtcggtgtccgacaccaacacgacaatgacacatgtggttacattaaatta-tttcattttctcaaattatta 43328475  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 45462881 - 45462827
Alignment:
Q  295 ccaacaagataccaacacatgtggttacatttaatcactttcattttctcaaattat 351  Q
    |||||| || ||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  45462881 ccaacatgacaccaatacatgtggttacatttaatca-tttca-tttctcaaattat 45462827  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 8518126 - 8518044
Alignment:
Q  267 ggtgtctaacatgtgtcggtgtcagaaaccaacaagataccaacacatgtggttacatttaatcactttcattttctcaaatt 349  Q
    ||||||| ||||||||| ||||||||  |||||| || ||| |||||| | |||||||| ||| ||||  |||||||||||||    
T  8518126 ggtgtctgacatgtgtctgtgtcagatgccaacacgacaccgacacatttagttacattcaattacttctattttctcaaatt 8518044  T

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