View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_high_1 (Length: 459)
Name: NF9701_high_1
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 6170092 - 6170514
Alignment:
| Q |
18 |
acatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaattgaaacaatttatcaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6170092 |
acatcaccaacaacaatctcaaagatcgatatcttttggcagttaccacttcgaacttaatcattttga-taacattgctaattgaaacaatttatcaaa |
6170190 |
T |
|
| Q |
118 |
ttgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgtttataatcaaggacaaagggagtaattatcnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170191 |
ttgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgtttataatcaaggacaaagggagtaattatcttt |
6170290 |
T |
|
| Q |
218 |
nnnncttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaattaatttatgagatatagaattggttccaggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170291 |
ttttcttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaattaatttatgagatatagaattggttccaggat |
6170390 |
T |
|
| Q |
318 |
gacataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcttatgtttgtattgttatttgatagtggatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6170391 |
gacataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcctatgtttgtattgttatttgatagtggatt |
6170490 |
T |
|
| Q |
418 |
tgttgtgtcctacaatttgtagct |
441 |
Q |
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| T |
6170491 |
tgttgtgtcctacaatttgtagct |
6170514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 6187038 - 6187142
Alignment:
| Q |
18 |
acatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaa-ttgaaacaatttatcaa |
116 |
Q |
| |
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||||||||||||||||| ||||| || |||| |||| | || |||||||||||| ||||| ||||||| ||||||||| |||| |||||||||||| |
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| T |
6187038 |
acatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaa |
6187137 |
T |
|
| Q |
117 |
attgt |
121 |
Q |
| |
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||||| |
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| T |
6187138 |
attgt |
6187142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 4243982 - 4244086
Alignment:
| Q |
18 |
acatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgct-aattgaaacaatttatcaa |
116 |
Q |
| |
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||||||||||||||||| || || || |||| |||||| ||| ||||| ||||| ||||| |||||||| ||||||| | |||| |||||||||||| |
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| T |
4243982 |
acatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaa |
4244081 |
T |
|
| Q |
117 |
attgt |
121 |
Q |
| |
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||||| |
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|
| T |
4244082 |
attgt |
4244086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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