View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_high_4 (Length: 252)
Name: NF9701_high_4
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 32481347 - 32481109
Alignment:
| Q |
5 |
caaagatatcgtctggatttggcaaagtgagnnnnnnncacaacactagccagccggtgtccagtcctgaagaggttctttgatttgaaattttgaattg |
104 |
Q |
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| T |
32481347 |
caaagatatcatctggatttggcaaagtgagaaaaaaacacaacactagccagccggtgtccagtcctgaagaggttcattgatttgaaattttgaattg |
32481248 |
T |
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| Q |
105 |
cttgcgtcagtaataaattttagtttgatgattgatattttgatgtttagatcgaaaatttcaataagttttgtgtccttgtaatatact-ttttctttg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| |
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| T |
32481247 |
cttgcgtcagtaataaattttagtttgatgattgatattttgatgtttagatcgaaaatttcaataagtcttgtgtacttgtaatatacttttttctttg |
32481148 |
T |
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| Q |
204 |
gtattagtccttgaataaggcttatttgattgttctgtg |
242 |
Q |
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| T |
32481147 |
gtattagtccttgaataaagcttatttgattgttctgtg |
32481109 |
T |
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