View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9701_high_5 (Length: 245)
Name: NF9701_high_5
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_high_5 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10034594 - 10034825
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034594 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
10034693 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10034694 |
cccaaattacaatcaattacgatttcatcccaaagaacaaagccatctgtaacggaatggggtctccaatatttgacagcactttccaacttgagtattg |
10034793 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10034794 |
aaaagggtgatgatatagttaacaccttgatg |
10034825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9841449 - 9841680
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841449 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaatgttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
9841548 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||| |||| ||| | || ||||||||||||| |||||||||||| |||||||||| ||| ||||| |
|
|
| T |
9841549 |
cccaaattacaatcaattgctatttctacccaaaaaacagcaccgccggttacggaatggggtcaccaatatttgacggcactttcctacttgcgaattg |
9841648 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| |
|
|
| T |
9841649 |
ataagggtgatgatatatttaacaccttgatg |
9841680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10263292 - 10263523
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10263292 |
attatttgaagtcaagcttaagatggaaatgctcaccgctcttgaaaggttgtttctaacatgtgcagagttgtcattttctgaaggagtttgtctacct |
10263391 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||||| ||| | || ||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
10263392 |
cccaaattacaatcaattgagatttctacccaaaaaacaacaccgccggttacggaatggggtctccaatatttgacagcactttcctacttgactattc |
10263491 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
10263492 |
aaaagggtgatgatatatttaacaccttgatg |
10263523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10666057 - 10666288
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10666057 |
attatttgaagtcaagcttaagatggacatgctcactgctcttgaaaagttgattctaagatgtgcacagttgtcattttgtgaaggagtttgtctacct |
10666156 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10666157 |
cccaaattacaaacaattgtgatttcatctcaaagaataactccgccggttacggaatggggtctccaatatttgacagcactttcctacttgagtattg |
10666256 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
10666257 |
aaaagggtgatgatatatttaacaccttgatg |
10666288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10431519 - 10431288
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||| || | |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
10431519 |
attatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaagttgcatatgaaatgtcaaaagctgtcattttgtgaaggagtttgtctacct |
10431420 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||| | ||||| || || | || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431419 |
cccaaattacaatcaatttggttttcatctcgaagaataactccgccggttacggaatggggtctccaatatttgacagcactttccttattgacaattc |
10431320 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
10431319 |
aaaagggtgatgatatatttaacaccttgatg |
10431288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10520076 - 10520307
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10520076 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgactctagattgtgtagagttgtcattttgtgaaggagtttgtctacct |
10520175 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||| |||| ||| | || |||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
10520176 |
cccaaattgcaatcaattaagatttctacccaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagcactttccgacttgggtattg |
10520275 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
10520276 |
taaagggtgatgatatatttaacaccttgatg |
10520307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10129513 - 10129744
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129513 |
attatttgaagtcaagcttaagattgacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
10129612 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||| ||| |||| || ||||||||||| ||| ||||||| || ||||| ||||| |||| |
|
|
| T |
10129613 |
cccaaattacaatcaattgagatacagtccaaaagaacagcaccgcctgtgacagaatggggtcttcaagatttgaccgctctttcaagattgagtattg |
10129712 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10129713 |
gaaagggtgatgatatagttaacaccttgatg |
10129744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10361279 - 10361048
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | ||||||||| |||||| |||| | || |||||||||| |||||||||||||||||||||||| |
|
|
| T |
10361279 |
attatttgaagtcaagcttaagatggacacgcttgccgctcttgaacggttgactctagattggccagagttgtcgttttgtgaaggagtttgtctacct |
10361180 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||| || |||| || ||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
10361179 |
cccaaattacaatcaattatgatacagtccaaaagaacagcactgcctgtgacagaatggggtctccaatatttgacagcactttccaacttgggtattg |
10361080 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10361079 |
gaaagggtgatgatatagttaacaccttgatg |
10361048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10373320 - 10373089
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10373320 |
attatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggttgagtttgggatgtcgagagttgtcattttgtgaaggagtttgtctacct |
10373221 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
| |||||||||||||||| ||||||||| | ||||| || ||| | || |||||||||||||||||| || | ||||| || || |||| ||| |
|
|
| T |
10373220 |
ctcaaattacaatcaatttggatttcatctcgaagaataacaccgccggttacggaatggggtctccaagatctaacagctctgtcaagcttgagtatta |
10373121 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
10373120 |
gaaaggatgatgatatagttaacaccttgatg |
10373089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9852330 - 9852561
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||| || | ||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
9852330 |
attatttgaagtcaagcttaagatggacatgctcaccgctcttgaagatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacct |
9852429 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
||||||||| | ||||| |||||| || ||| |||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||| |||| |
|
|
| T |
9852430 |
cccaaattaagaacaattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagctctttcatcattgtggattg |
9852529 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
9852530 |
taaagggtgatgatatatttaacaccttgatg |
9852561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 9980070 - 9980288
Alignment:
| Q |
14 |
aagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaat |
113 |
Q |
| |
|
|||||||||||||| |||||| | || ||||||| ||| || | ||||| | |||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
9980070 |
aagcttaagatggaaatgctctccgcccttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaat |
9980169 |
T |
|
| Q |
114 |
caattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatga |
213 |
Q |
| |
|
||||| |||||| || ||| |||| ||| | || |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||| |
|
|
| T |
9980170 |
caattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagcacttttcgacttgagaattgtaaagggtgatga |
9980269 |
T |
|
| Q |
214 |
tatagttaacaccttgatg |
232 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
9980270 |
tatatttaacaccttgatg |
9980288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10583104 - 10583335
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| |||||||||| ||| || | ||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
10583104 |
attatttgaagtcaagtttaagatggaaatgctcaccgctcttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacct |
10583203 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
| |||||||| ||||||| ||||| |||||| |||| ||| | || ||||||||||||||| || || | ||||| ||||| | || |||| |
|
|
| T |
10583204 |
ctcaaattacgatcaattgtgatttttacccaaaaaacagcaccgccggttacggaatggggtctcaaagatctaacagctctttcaagctggagtattg |
10583303 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |
|
|
| T |
10583304 |
gaaaggatgatgatatatttaacaccttgatg |
10583335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 10531260 - 10531420
Alignment:
| Q |
9 |
aagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaatt |
108 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| |||| |||| | ||| | ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10531260 |
aagtcaagcttcggatggacacgctcactgctcttgaacaattgactctagattgtcccgagttgttattttgtgaaggaatttgtctacctcccaaatt |
10531359 |
T |
|
| Q |
109 |
acaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa |
169 |
Q |
| |
|
|||||||||| ||| || | ||||||| ||| || ||||||| ||||||||||||||| |
|
|
| T |
10531360 |
acaatcaattgtgatatctttccaaagagcaacgccgcctgtaacagaatggggtctccaa |
10531420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 10680059 - 10680167
Alignment:
| Q |
9 |
aagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaatt |
108 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| | || |||| | ||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
10680059 |
aagtcaagcttcggatggacacgctcactgctcttgaacaatagactctagattgtccagagttgttattt-gtgaaggagtttgtctacctcccaaatt |
10680157 |
T |
|
| Q |
109 |
acaatcaatt |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
10680158 |
acaatcaatt |
10680167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 13852931 - 13852822
Alignment:
| Q |
9 |
aagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaatt |
108 |
Q |
| |
|
|||| |||||| |||||||| ||| || ||||||||| ||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13852931 |
aagtgaagcttcggatggacacgcttaccgctcttgaacggttggacttggaatgtcgagagttgtcattttgtgaaggagtttgtctacctcctaaatt |
13852832 |
T |
|
| Q |
109 |
acaatcaatt |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
13852831 |
acaatcaatt |
13852822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 10503176 - 10503312
Alignment:
| Q |
4 |
atttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctccc |
103 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| ||||||||| |||| | | | ||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
10503176 |
atttgaagtcaagcttcagatgaacacgctcacggctcttgaagagttggacttggattgtcaggagttatcattttgtgaaggagtttgtcttcctccc |
10503275 |
T |
|
| Q |
104 |
aaattacaatcaattacgatttcatcccaaagaacaa |
140 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |
|
|
| T |
10503276 |
aaattacaatcaattgatatttggtcccaaagaacaa |
10503312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 11771898 - 11771993
Alignment:
| Q |
74 |
tcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| || || ||||||| ||||| |||| | || || ||||||||||||||| |
|
|
| T |
11771898 |
tcattttgtgaaggagtttgtctacctcccaacttacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaa |
11771993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 11779387 - 11779292
Alignment:
| Q |
74 |
tcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa |
169 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||| ||||| |||| | || || ||||||||||||||| |
|
|
| T |
11779387 |
tcattttgtgaaagagtttgtctacctcccaaattacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaa |
11779292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 10091457 - 10091499
Alignment:
| Q |
70 |
gttgtcattttgtgaaggagtttgtctacctcccaaattacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091457 |
gttgtcattttgtgaaggagtttgtctacctcccaaattacaa |
10091499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 10198339 - 10198381
Alignment:
| Q |
70 |
gttgtcattttgtgaaggagtttgtctacctcccaaattacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10198339 |
gttgtcattttgtgaaggagtttgtctacctcccaaattacaa |
10198381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 10085907 - 10085944
Alignment:
| Q |
62 |
tgtgcagagttgtcattttgtgaaggagtttgtctacc |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
10085907 |
tgtggagagttgtcattttgtgaaggagtttgcctacc |
10085944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 10192827 - 10192864
Alignment:
| Q |
62 |
tgtgcagagttgtcattttgtgaaggagtttgtctacc |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
10192827 |
tgtggagagttgtcattttgtgaaggagtttgcctacc |
10192864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 55080 - 54849
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | || ||||||| ||| || | ||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
55080 |
attatttgaagtcaagcttaagatggaaatgctctccgcccttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacct |
54981 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattg |
200 |
Q |
| |
|
| |||||||||||||||| |||||| || ||| |||| ||| | || ||||||||||||||||||||||||||||| |||| || ||| |||| |
|
|
| T |
54980 |
ctcaaattacaatcaattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagctcttttttttttgtgtattg |
54881 |
T |
|
| Q |
201 |
aaaagggtgatgatatagttaacaccttgatg |
232 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
54880 |
taaagggtgatgatatatttaacaccttgatg |
54849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 26909479 - 26909647
Alignment:
| Q |
1 |
attatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacct |
100 |
Q |
| |
|
||||||| |||| |||||| |||||||| |||||||| ||||||| |||| |||| | ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
26909479 |
attatttaaagtgaagcttcggatggacacgctcacagatcttgaacagttgtatctggactgtcgagagttgtcattttgtgaaggtgtttgtctacct |
26909578 |
T |
|
| Q |
101 |
cccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa |
169 |
Q |
| |
|
||||| |||||||||||| ||| || |||| ||||| ||| ||||| ||||||||| |||||||| |
|
|
| T |
26909579 |
cccaacttacaatcaattgacctttggtctcaaataacaacaccgtctgttacggaatggtgtctccaa |
26909647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 11487628 - 11487851
Alignment:
| Q |
9 |
aagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaatt |
108 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
11487628 |
aagtcaaacttcggatggacatgctcactgctcttgaagttttgtctctgaattgtccagagttgtcattttgtgaagatgtttctctacctcccaaatt |
11487727 |
T |
|
| Q |
109 |
acaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggt |
208 |
Q |
| |
|
| |||||||| ||||| || ||||| ||| || |||| ||||||||||||||| || || |||| || ||||| ||||| |||| | |||| |
|
|
| T |
11487728 |
agaatcaattgagattttgtcggaaagatcaacgccgcctgttacggaatggggtctcaaagatctgaccgctctttcacggttgactattggagtgggt |
11487827 |
T |
|
| Q |
209 |
gatgatatagttaacaccttgatg |
232 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
11487828 |
gatgatatacttaacaccttgatg |
11487851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 44955066 - 44955024
Alignment:
| Q |
72 |
tgtcattttgtgaaggagtttgtctacctcccaaattacaatc |
114 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
44955066 |
tgtcattttgtgaaggtgtttgcctacctcccaaattacaatc |
44955024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 17850338 - 17850287
Alignment:
| Q |
67 |
agagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt |
118 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
17850338 |
agagttgtcattttgtggaggagtttccctacctcccaagttacaatcaatt |
17850287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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