View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_low_11 (Length: 252)
Name: NF9701_low_11
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 47036376 - 47036135
Alignment:
| Q |
11 |
agcaaaggacatgtcccaaatagtttgagtaatatgaaagtagaagacttaatagatagtaatgagcaatggaatttatctctattaaataaatagccac |
110 |
Q |
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| T |
47036376 |
agcaaaggacatgtcccaaatagtttgagtaatatgaaagtagaagacttaatagatagtaatgagcaatggaatttatctctattaaataaatagccac |
47036277 |
T |
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| Q |
111 |
ttgttagatgatatagtccttgacataaggagcctagtgcaatctgatatcaatttaagagctgatttgtgtgttaccctgggatattgtcgctaccact |
210 |
Q |
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| T |
47036276 |
ttgttagatgatatagtccttgacataaggagcctagtgcaatctgatatcaatttaggagctgatttgtgtgttaccctgggatattgtcgctaccact |
47036177 |
T |
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| Q |
211 |
tacaagttacaagtccctttgcaggtttaataacatggaggc |
252 |
Q |
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| T |
47036176 |
tacaagttacaagtccctttgcaggtttaataacatggaggc |
47036135 |
T |
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