View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_low_12 (Length: 249)
Name: NF9701_low_12
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 14156205 - 14156013
Alignment:
| Q |
1 |
tcagtaaacaatgtatcattctcactctcaaacacaacacttcttcaatctcatttctttgcacaatctaatggagtttacactcctgatttcccaagac |
100 |
Q |
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| T |
14156205 |
tcagtaaacaatgtatcattctcactctcaaacacaacacttcttcaatctcatttctttggacaatctaatggagtttacactcctgatttcccaagac |
14156106 |
T |
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| Q |
101 |
ggtccttgtttaaattcaattataccgcgacctcgccaaacaacaccatggtgagcagcggaacaaagattgtggttctttctttcaaaacaa |
193 |
Q |
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| T |
14156105 |
ggtccttgtttaaattcaattatactgcgacctcaccaaacaacaccatggtgagcagtggaacaaagattgtggttctttctttcaaaacaa |
14156013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 21183316 - 21183400
Alignment:
| Q |
136 |
ccaaacaacaccatggtgagcagcggaacaaagattgtggttctttctttcaaaacaa--gtggagcatgtaatgcaggacacta |
218 |
Q |
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| T |
21183316 |
ccaaacaacaccatggtgagcaacggaacaaaggttacggttcttcctttcaacacaagtgtggagcttgtgatgcaagacacta |
21183400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 21205692 - 21205752
Alignment:
| Q |
38 |
cacttcttcaatctcatttctttgcacaatctaatggagtttacactcctgatttcccaag |
98 |
Q |
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| T |
21205692 |
cacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag |
21205752 |
T |
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