View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9701_low_13 (Length: 249)

Name: NF9701_low_13
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9701_low_13
NF9701_low_13
[»] chr7 (5 HSPs)
chr7 (68-160)||(11519035-11519127)
chr7 (66-159)||(14267296-14267389)
chr7 (68-158)||(29698726-29698816)
chr7 (1-68)||(29698638-29698707)
chr7 (1-68)||(11519146-11519215)
[»] scaffold0285 (2 HSPs)
scaffold0285 (68-160)||(21163-21255)
scaffold0285 (1-65)||(21277-21343)
[»] chr3 (5 HSPs)
chr3 (31-198)||(13613820-13613973)
chr3 (68-160)||(5555466-5555558)
chr3 (1-62)||(13613984-13614047)
chr3 (73-152)||(42369684-42369763)
chr3 (1-69)||(5555577-5555646)
[»] chr8 (1 HSPs)
chr8 (68-160)||(14993244-14993336)
[»] scaffold1121 (1 HSPs)
scaffold1121 (68-160)||(550-642)
[»] chr4 (1 HSPs)
chr4 (68-160)||(10491549-10491640)
[»] chr2 (1 HSPs)
chr2 (68-158)||(24372917-24373007)
[»] scaffold0160 (1 HSPs)
scaffold0160 (128-181)||(5850-5903)
[»] scaffold0364 (1 HSPs)
scaffold0364 (119-160)||(15962-16002)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 11519127 - 11519035
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11519127 tgaattgcttgattcgattcatgattcattgattcatatctagcattccttttgtccattttccttgtgtcactccttttgaatcaagtcaaa 11519035  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 14267296 - 14267389
Alignment:
Q  66 catgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaa 159  Q
    ||||||||||| ||| | |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  14267296 catgaattgcttgattctattcatgattcattgattcatatcaagcgttccttttgtccattttccttgtgtcactccttttgaatcgtgtcaa 14267389  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 29698726 - 29698816
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtca 158  Q
    ||||||||| ||| | ||||| |||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29698726 tgaattgcttgattctattcaagattcattgattcatatcaagcattccttttgtccatttttcttgtgtcactccttttgaatcgagtca 29698816  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29698638 - 29698707
Alignment:
Q  1 ttgttaaagcaccctagcaaaccatgtctc--agtgtcatgtgaagctttgatgtctcgtgtgttgtcat 68  Q
    ||||||||||||||||||||||||||||||  ||||||||||    ||||||||||| ||||||||||||    
T  29698638 ttgttaaagcaccctagcaaaccatgtctcatagtgtcatgtatttctttgatgtcttgtgtgttgtcat 29698707  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11519215 - 11519146
Alignment:
Q  1 ttgttaaagcaccctagcaaaccatgtctca--gtgtcatgtgaagctttgatgtctcgtgtgttgtcat 68  Q
    |||||||| |||||||||||| |||||||||  |||||||||||  | || |||||||||||||||||||    
T  11519215 ttgttaaaacaccctagcaaatcatgtctcattgtgtcatgtgattccttaatgtctcgtgtgttgtcat 11519146  T

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Target: scaffold0285 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 21255 - 21163
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||  ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21255 tgaattgcatgattcgattcatgattcattgattcatatctagcattccttttgtccattttccttgtgtcactccttttaaatcgagtcaaa 21163  T

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Target: scaffold0285; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21343 - 21277
Alignment:
Q  1 ttgttaaagcaccctagcaaaccatgtctca--gtgtcatgtgaagctttgatgtctcgtgtgttgt 65  Q
    ||||||||||||||||| |||||||||| ||   ||||||||||  | |||||||||||||||||||    
T  21343 ttgttaaagcaccctagaaaaccatgtcacattatgtcatgtgattccttgatgtctcgtgtgttgt 21277  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 13613973 - 13613820
Alignment:
Q  31 agtgtcatgtgaagctttgatgtctcgtgtgttgtcatgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttc 130  Q
    ||||||||||||| | |||||||||| ||||| ||||||||||||| |||  ||||||||||||||||||| |||||||||||| ||||               
T  13613973 agtgtcatgtgaatccttgatgtctcttgtgtcgtcatgaattgcttgatttgattcatgattcattgattcatatctagcatttcttt----------- 13613885  T
Q  131 cttgtgtcactccttttgaatcgagtcaaaccttgtctcattgtgtcttgtattcccttgatgtcttg 198  Q
       ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||    
T  13613884 ---gtgtcactccttttgaatcaagtcaaaccttgtctcaatgtgtcttgtattcccttgttgtcttg 13613820  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 5555558 - 5555466
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||| |||  |||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||| |||  |||||||||||    
T  5555558 tgaattgcttgatttgattcatgattcgttgattcatatcaagcattccttatgtccattttccttgtgtcactccattttgatcgagtcaaa 5555466  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13614047 - 13613984
Alignment:
Q  1 ttgttaaagcaccctagcaaaccatgtctc--agtgtcatgtgaagctttgatgtctcgtgtgt 62  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||  ||||||||||| ||||||    
T  13614047 ttgttaaagcaccctagcaaatcatgtctcatagtgtcatgtgattctttgatgtcttgtgtgt 13613984  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 42369763 - 42369684
Alignment:
Q  73 tgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatc 152  Q
    |||| ||| ||||||||||||||||| ||  |||| | ||||| || ||||||||||||||||||||| ||||| |||||    
T  42369763 tgcttgattcgattcatgattcattgtttcgtatcaaacattctttctgtccattttccttgtgtcacacctttcgaatc 42369684  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5555646 - 5555577
Alignment:
Q  1 ttgttaaagcaccctagcaaaccatgtctca--gtgtcatgtgaagctttgatgtctcgtgtgttgtcatg 69  Q
    ||||||||||||| |||||||||||||||||  |||||||||||  | ||||| ||| |||||||||||||    
T  5555646 ttgttaaagcacc-tagcaaaccatgtctcattgtgtcatgtgattccttgatatcttgtgtgttgtcatg 5555577  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 14993336 - 14993244
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||| ||| |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14993336 tgaattgcttgattcgattcatgattcatttattcatatcaagcattccttttgtccattttccttgtgtcactccttttgaaccgagtcaaa 14993244  T

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Target: scaffold1121 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 550 - 642
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||| |||  ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  550 tgaattgcttgatttgattcatgattcattgattcatatcaagcattccttctgtccattttccttgtgtcactccttttgactcgagtcaaa 642  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 10491549 - 10491640
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||  ||||||| |||||||    
T  10491549 tgaattgcttgattcgattcatgattcattgattcatatcaagcattccttctgtccattttccttgtgtcactcc-cttgaatcaagtcaaa 10491640  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 24372917 - 24373007
Alignment:
Q  68 tgaattgctggatccgattcatgattcattgatttatatctagcattccttttgtccattttccttgtgtcactccttttgaatcgagtca 158  Q
    ||||||||| ||| ||| ||||||||| |||||| |||||  |||||||||||||||||||||||| | |||||| |||| ||||||||||    
T  24372917 tgaattgcttgattcgagtcatgattcgttgattcatatcatgcattccttttgtccattttccttatatcactctttttaaatcgagtca 24373007  T

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Target: scaffold0160 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 5850 - 5903
Alignment:
Q  128 ttccttgtgtcactccttttgaatcgagtcaaaccttgtctcattgtgtcttgt 181  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  5850 ttccttgtgtcactccttttgaatcgagtaaaaccttgtctcgttgtgtcttgt 5903  T

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Target: scaffold0364 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 16002 - 15962
Alignment:
Q  119 ttgtccattttccttgtgtcactccttttgaatcgagtcaaa 160  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  16002 ttgtccattttccttgtgtcactcc-tttgaatcaagtcaaa 15962  T

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