View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9701_low_17 (Length: 243)

Name: NF9701_low_17
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9701_low_17
NF9701_low_17
[»] chr8 (6 HSPs)
chr8 (144-243)||(37280515-37280614)
chr8 (1-69)||(37280695-37280763)
chr8 (1-69)||(37276846-37276914)
chr8 (144-224)||(37276714-37276794)
chr8 (12-69)||(37264896-37264953)
chr8 (1-59)||(37261133-37261191)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 37280614 - 37280515
Alignment:
Q  144 taaaggaatgttggtgggttggagtattcgtaggaaagggttcataatatacataaaattattacagttcaaaggtattccaaaacatgaggaaaatcat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37280614 taaaggaatgttggtgggttggagtattcgtaggaaagggttcataatatacataaaattattacagttcaaaggtattccaaaacatgaggaaaatcat 37280515  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37280763 - 37280695
Alignment:
Q  1 cataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37280763 cataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga 37280695  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37276914 - 37276846
Alignment:
Q  1 cataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga 69  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  37276914 cataggcaaggccaatcatggctaacattacaagggctagaataacaacatgccttgaatgtgccatga 37276846  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 37276794 - 37276714
Alignment:
Q  144 taaaggaatgttggtgggttggagtattcgtaggaaagggttcataatatacataaaattattacagttcaaaggtattcc 224  Q
    ||||| ||||||||||| |||||||| |||||||||| | || ||||||||||||||||||| | |||||||||| |||||    
T  37276794 taaagaaatgttggtggattggagtagtcgtaggaaatgattgataatatacataaaattataatagttcaaagggattcc 37276714  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 37264953 - 37264896
Alignment:
Q  12 ccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga 69  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||    
T  37264953 ccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccatga 37264896  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37261191 - 37261133
Alignment:
Q  1 cataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaa 59  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||| |||| |||||||    
T  37261191 cataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaa 37261133  T

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