View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_low_21 (Length: 236)
Name: NF9701_low_21
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_low_21 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 3315974 - 3316197
Alignment:
| Q |
14 |
attacctcatataagagtacttaaattaacataaactacccttagataaggtgagtacatcttatacacagacatcaaatactaacaagctactcgctta |
113 |
Q |
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| T |
3315974 |
attacctcatataagagtacttaaattaacataaactacccttagataaggtgattacatcttatatacagacatcaaatactaacaagctactcgctta |
3316073 |
T |
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| Q |
114 |
gtaaaa-gctactaagatttttaatatttcaaacttaaaaatataaatgcgcatgcttgtgatttgaattataacatatagtattcatttgcattacagg |
212 |
Q |
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| T |
3316074 |
gtaaaaagctactaagatttttaatatttcaaacttaaaaatataaatgtgcatgcttgtgatttgaattataacatatagtattcatttgcattacagg |
3316173 |
T |
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| Q |
213 |
atttcctggtgacctcaaagtaac |
236 |
Q |
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| T |
3316174 |
atttcctggtgacctcaaagtaac |
3316197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 3323471 - 3323507
Alignment:
| Q |
200 |
tttgcattacaggatttcctggtgacctcaaagtaac |
236 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
3323471 |
tttgaattacaggatttcctggtgacctcaaagtaac |
3323507 |
T |
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