View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_low_23 (Length: 229)
Name: NF9701_low_23
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 32481625 - 32481403
Alignment:
| Q |
7 |
gatgaaattgaagacatcaagtttacttccaagagctcggcctcctctatcatatcaacaatggaggatattgcacgcatgttgaatatgaagatagtaa |
106 |
Q |
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| T |
32481625 |
gatgaaattgaagacatcaagtttacttccaagagctcggcctcctctatcatatcaacaatggaggatattgcacacatgttgaatatgaagatagtaa |
32481526 |
T |
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| Q |
107 |
agaataatggagagatgctaaagttggagagagagcaagatcttcgaaaaaggccactcactatttctactgaaatatttgagtttgctccatctttcta |
206 |
Q |
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| T |
32481525 |
agaataatggagagatgctaaagttggagagagagcaagatcttcgaaaaaggccactcactatttctactgaaatatttgagtttgctccatctttcta |
32481426 |
T |
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| Q |
207 |
tttggttgagataaagaagtaca |
229 |
Q |
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| T |
32481425 |
tttggttgagataaagaagtaca |
32481403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 46970823 - 46971042
Alignment:
| Q |
7 |
gatgaaattgaagacatcaagtttacttccaagagctcggcctcctctatcatatcaacaatggaggatattgcacgcatgttgaatatgaagatagtaa |
106 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
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| T |
46970823 |
gatgaaattgaagacatcaagtttacctccgtgagctcggcctcctctatcatatcaacaatagaggatattgcacacattttgaagatgaagatagtaa |
46970922 |
T |
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| Q |
107 |
agaataatggagagatgctaaagttggagagagagcaagatcttcgaaaaaggccactcactatttctactgaaatatttgagtttgctccatctttcta |
206 |
Q |
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| T |
46970923 |
agaataatggagagatgttgaagttagagagactgcaggatcttccaaaagggccgcttaccatttctgctgaaatattcgagtttgctccatctttctt |
46971022 |
T |
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| Q |
207 |
tttggttgagataaagaagt |
226 |
Q |
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| T |
46971023 |
tttggtcgagttaaagaagt |
46971042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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