View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9701_low_4 (Length: 377)

Name: NF9701_low_4
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9701_low_4
NF9701_low_4
[»] scaffold0045 (4 HSPs)
scaffold0045 (202-360)||(19090-19248)
scaffold0045 (1-188)||(18862-19052)
scaffold0045 (202-360)||(49574-49732)
scaffold0045 (99-188)||(49445-49533)
[»] chr5 (2 HSPs)
chr5 (42-100)||(12422379-12422438)
chr5 (35-89)||(43352925-43352979)
[»] chr1 (4 HSPs)
chr1 (35-90)||(43116052-43116107)
chr1 (38-90)||(41918936-41918988)
chr1 (35-71)||(5426239-5426275)
chr1 (12-71)||(38894778-38894835)
[»] chr8 (5 HSPs)
chr8 (35-103)||(25616526-25616595)
chr8 (35-89)||(7389203-7389257)
chr8 (35-90)||(4466448-4466503)
chr8 (35-82)||(25620742-25620789)
chr8 (12-78)||(40587699-40587763)
[»] chr3 (5 HSPs)
chr3 (35-99)||(53800493-53800558)
chr3 (42-90)||(11602199-11602247)
chr3 (35-90)||(26777878-26777933)
chr3 (42-90)||(4139382-4139430)
chr3 (12-71)||(19368948-19369005)
[»] scaffold0051 (1 HSPs)
scaffold0051 (35-90)||(62066-62121)
[»] chr7 (7 HSPs)
chr7 (35-90)||(4848352-4848407)
chr7 (35-71)||(49146150-49146186)
chr7 (35-100)||(42912125-42912191)
chr7 (38-71)||(46197440-46197473)
chr7 (42-90)||(11840482-11840530)
chr7 (42-90)||(21601005-21601053)
chr7 (35-63)||(47168681-47168709)
[»] chr6 (4 HSPs)
chr6 (35-90)||(24939850-24939905)
chr6 (35-90)||(4107958-4108013)
chr6 (35-64)||(28573856-28573885)
chr6 (35-88)||(34316957-34317010)
[»] chr4 (4 HSPs)
chr4 (35-90)||(12682783-12682838)
chr4 (35-71)||(35833441-35833477)
chr4 (35-90)||(2116093-2116148)
chr4 (35-89)||(46104184-46104238)


Alignment Details
Target: scaffold0045 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 202 - 360
Target Start/End: Original strand, 19090 - 19248
Alignment:
Q  202 tatttattagaagacaacaaattttggtgagctatgcagaatttcaaattgtcaaacttatactcaatttgtgaaatagctatattaataaccatactca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19090 tatttattagaagacaacaaattttggtgagctatgcagaatttcaaattgtcaaacttatactcaatttgtgaaatagctatattaataaccatactca 19189  T
Q  302 tcagtgaattttataatttatttatgaaaagctaaataagataatttgtaagtggttgt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19190 tcagtgaattttataatttatttatgaaaagctaaataagataatttgtaagtggttgt 19248  T

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Target: scaffold0045; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 18862 - 19052
Alignment:
Q  1 aaaaactcactaataagtagattaccaaaatacccccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtatagt---atata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||     |||||    
T  18862 aaaaactcactaataagtagattaccaaaatacccccctcctaggggcaaaatgataaaatcaatggacatgtatttttataatagtatatatagatata 18961  T
Q  98 gatttatctccaatgctctacgtatttacagacacctacaaatttagtattaccgaaatattatatataagatgtataacatggacaccat 188  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18962 gatttatctccaatgctctacatatttatagacacctacaaatttagtattaccgaaatattatatataagatgtataacatggacaccat 19052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 202 - 360
Target Start/End: Original strand, 49574 - 49732
Alignment:
Q  202 tatttattagaagacaacaaattttggtgagctatgcagaatttcaaattgtcaaacttatactcaatttgtgaaatagctatattaataaccatactca 301  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49574 tatttattagaagataacaaattttggtgagctatgctgaatttcaaattgtcaaacttatactcaatttgtgaaatagctatattaataaccatactca 49673  T
Q  302 tcagtgaattttataatttatttatgaaaagctaaataagataatttgtaagtggttgt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49674 tcagtgaattttataatttatttatgaaaagctaaataagataatttgtaagtggttgt 49732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 49445 - 49533
Alignment:
Q  99 atttatctccaatgctctacgtatttacagacacctacaaatttagtattaccgaaatattatatataagatgtataacatggacaccat 188  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49445 atttatctccaatgctctacatatttatagacacctacaaatttagtattaccgaaatattatatataagat-tataacatggacaccat 49533  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 12422379 - 12422438
Alignment:
Q  42 taggggcaaaatggtaaaatcaatggacatgtatttttatagtagta-tagtatatagat 100  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||    
T  12422379 taggggcaaaatggtaaaatcaaaggacatgaatttttatattagtattagtatatagat 12422438  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 43352979 - 43352925
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtat 89  Q
    |||||||||  |||||||| | ||| |||||||||||||||||||||| ||||||    
T  43352979 cccctcctataggcaaaattggaaattcaatggacatgtatttttatattagtat 43352925  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 43116107 - 43116052
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||    
T  43116107 cccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtata 43116052  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 41918936 - 41918988
Alignment:
Q  38 ctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||||||||||||| | ||| ||||||||||| |||||||||| |||||||    
T  41918936 ctcctaggggcaaaattggaaattcaatggacatatatttttatattagtata 41918988  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 5426275 - 5426239
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacat 71  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  5426275 ccccttctaagggcaaaatggtaaaatcaatggacat 5426239  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 38894835 - 38894778
Alignment:
Q  12 aataagtagattaccaaaatacccccctcctaggggcaaaatggtaaaatcaatggacat 71  Q
    |||||||||||||||||| | ||||  |  |||||||||||||||||| |||||||||||    
T  38894835 aataagtagattaccaaattgcccc--ttataggggcaaaatggtaaattcaatggacat 38894778  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 25616526 - 25616595
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagta-tagtatatagattta 103  Q
    |||||| || |||||||||||||||||||||||||||  | ||||||| ||||| |||||||||||||||    
T  25616526 cccctcttaagggcaaaatggtaaaatcaatggacattaacttttatattagtattagtatatagattta 25616595  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 7389257 - 7389203
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtat 89  Q
    |||||||| ||||||||||||||||||||||||||||  | ||||||| ||||||    
T  7389257 cccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtat 7389203  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 4466448 - 4466503
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    ||||||||| ||| |||||||||||||||||||||||  | ||||||| |||||||    
T  4466448 cccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtata 4466503  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 25620742 - 25620789
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttata 82  Q
    |||||| |||||||||||| |||||||||||||||||| | |||||||    
T  25620742 cccctcataggggcaaaatagtaaaatcaatggacatgaacttttata 25620789  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 40587699 - 40587763
Alignment:
Q  12 aataagtagattaccaaaatacccccctcctaggggcaaaatggtaaaatcaatggacatgtatttt 78  Q
    |||||||||||||||||| | ||||  |  |||||||||||||||||| ||||||||||| ||||||    
T  40587699 aataagtagattaccaaattgcccc--ttataggggcaaaatggtaaattcaatggacatttatttt 40587763  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 53800558 - 53800493
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagta-tagtatataga 99  Q
    ||||||||| |||||||||||||||||||||||||||  | ||||||| ||||| |||||||||||    
T  53800558 cccctcctaagggcaaaatggtaaaatcaatggacattaacttttatattagtattagtatataga 53800493  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 11602199 - 11602247
Alignment:
Q  42 taggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  11602199 taggggcaaaatggtaaaatcaacggacatggatttttatattagtata 11602247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 26777878 - 26777933
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||| |||||||||||||||||||||||||||| |  | ||||||| |||||||    
T  26777878 cccctcataggggcaaaatggtaaaatcaatggacgttaacttttatattagtata 26777933  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 4139382 - 4139430
Alignment:
Q  42 taggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    ||||| ||||||||||||||||||||||||  | ||||||| |||||||    
T  4139382 tagggacaaaatggtaaaatcaatggacattaacttttatattagtata 4139430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 19368948 - 19369005
Alignment:
Q  12 aataagtagattaccaaaatacccccctcctaggggcaaaatggtaaaatcaatggacat 71  Q
    |||||||||||||||||| | ||||  |  ||||||||||||||||||||||| ||||||    
T  19368948 aataagtagattaccaaattgcccc--ttataggggcaaaatggtaaaatcaagggacat 19369005  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 62121 - 62066
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||| ||||||||||||||||||||||||||||||  | ||||||| |||||||    
T  62121 cccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtata 62066  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 4848407 - 4848352
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||| ||||||||||||||||||||||||||||||  | ||||||| |||||||    
T  4848407 cccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtata 4848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 49146150 - 49146186
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacat 71  Q
    |||||| ||||||||||||||||||||||||||||||    
T  49146150 cccctcataggggcaaaatggtaaaatcaatggacat 49146186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 42912191 - 42912125
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagta-tagtatatagat 100  Q
    |||||| || |||||||| ||||||||||||||||||   |||||||| ||||| ||||||||||||    
T  42912191 cccctcttaagggcaaaaaggtaaaatcaatggacatcactttttatactagtactagtatatagat 42912125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 46197473 - 46197440
Alignment:
Q  38 ctcctaggggcaaaatggtaaaatcaatggacat 71  Q
    |||||| |||||||||||||||||||||||||||    
T  46197473 ctcctaagggcaaaatggtaaaatcaatggacat 46197440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 11840482 - 11840530
Alignment:
Q  42 taggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||||||||||||||| ||||||||||| | |||| |||| ||||||    
T  11840482 taggggcaaaatggtaaattcaatggacatttcttttaatagaagtata 11840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 21601005 - 21601053
Alignment:
Q  42 taggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||||||||||||||| ||||||||||| | |||| |||| ||||||    
T  21601005 taggggcaaaatggtaaattcaatggacatttcttttaatagaagtata 21601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 47168709 - 47168681
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatca 63  Q
    |||||||||||||||||||||||||||||    
T  47168709 cccctcctaggggcaaaatggtaaaatca 47168681  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 24939850 - 24939905
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||||||||| |||||| | ||| |||||||||||||||||||||| |||||||    
T  24939850 cccctcctagggccaaaattgaaaattcaatggacatgtatttttatattagtata 24939905  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 4108013 - 4107958
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||| |||||| |||||||||||||||||||||||  | ||||||| |||||||    
T  4108013 cccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtata 4107958  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 28573856 - 28573885
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaa 64  Q
    ||||||||||||||||||||||||||||||    
T  28573856 cccctcctaggggcaaaatggtaaaatcaa 28573885  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 34317010 - 34316957
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagta 88  Q
    |||||| ||||||||||| ||||||||||||||||||   |||||||| |||||    
T  34317010 cccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagta 34316957  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 12682783 - 12682838
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    |||||| ||||||||||||||||||||||||||||||  | ||||||| |||||||    
T  12682783 cccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtata 12682838  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 35833441 - 35833477
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacat 71  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35833441 cccctcataggggcaaaatggtaaaatcaatggacat 35833477  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 2116148 - 2116093
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtata 90  Q
    ||||||||| || ||||||||||||||||||||||||  | ||||||| |||||||    
T  2116148 cccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtata 2116093  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 46104238 - 46104184
Alignment:
Q  35 cccctcctaggggcaaaatggtaaaatcaatggacatgtatttttatagtagtat 89  Q
    |||||| | ||||||||||||||||||||||||||||  | ||||||| ||||||    
T  46104238 cccctcattggggcaaaatggtaaaatcaatggacattaacttttatattagtat 46104184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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