View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9701_low_9 (Length: 266)
Name: NF9701_low_9
Description: NF9701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9701_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39559213 - 39558954
Alignment:
| Q |
1 |
tcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcga |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559213 |
tcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcga |
39559114 |
T |
|
| Q |
101 |
cgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559113 |
cgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatg |
39559014 |
T |
|
| Q |
201 |
gcagagatcgatgcttaggttttcaactcctcgtgtcgtaatgattaaatcctttgcttc |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39559013 |
gcagagatcgatgcttaggttttcaactcctcgtgttgtaatgattaaatcctttgcttc |
39558954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 50814547 - 50814322
Alignment:
| Q |
3 |
ctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacg |
102 |
Q |
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||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| ||||||||||| ||| |
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| T |
50814547 |
ctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacg |
50814448 |
T |
|
| Q |
103 |
aaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggc |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||| | ||||| |
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| T |
50814447 |
aaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggc |
50814351 |
T |
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| Q |
203 |
agagatcgatgcttaggttttcaactcct |
231 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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| T |
50814350 |
agagatttatgcttaggttttcaactcct |
50814322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 50861317 - 50861542
Alignment:
| Q |
3 |
ctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacg |
102 |
Q |
| |
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||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| ||||||||||| ||| |
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| T |
50861317 |
ctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacg |
50861416 |
T |
|
| Q |
103 |
aaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggc |
202 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||| | ||||| |
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| T |
50861417 |
aaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggc |
50861513 |
T |
|
| Q |
203 |
agagatcgatgcttaggttttcaactcct |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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|
| T |
50861514 |
agagatttatgcttaggttttcaactcct |
50861542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 39558949 - 39558718
Alignment:
| Q |
1 |
tcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcga |
100 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| ||| || ||| ||| || | ||| |||||||| ||||||||| ||||||||| ||||||||| | |
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| T |
39558949 |
tcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggacttttagcaagggaagattaa |
39558850 |
T |
|
| Q |
101 |
cgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattta-- |
198 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||| ||||| | || | | ||| ||| |
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| T |
39558849 |
cgaaaggaa---cttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatcggagttata |
39558753 |
T |
|
| Q |
199 |
-tggcagagatcgatgcttaggttttcaactcctc |
232 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| |
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| T |
39558752 |
cttgcagagattgatgcttaggttttcaactcctc |
39558718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 50814822 - 50814636
Alignment:
| Q |
1 |
tcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||||||| ||||||||| ||||||||| |||||||||| | |
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|
| T |
50814822 |
tcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaa |
50814723 |
T |
|
| Q |
101 |
cgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
190 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||| | |||||||||| | |||||| |
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|
| T |
50814722 |
cgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
50814636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 50861042 - 50861228
Alignment:
| Q |
1 |
tcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||||||| ||||||||| ||||||||| |||||||||| | |
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|
| T |
50861042 |
tcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaa |
50861141 |
T |
|
| Q |
101 |
cgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
190 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||| | |||||||||| | |||||| |
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| T |
50861142 |
cgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
50861228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 49857451 - 49857591
Alignment:
| Q |
6 |
tagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaa |
105 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| || |||||||| ||| ||| |||| |||||||| | ||| ||||| |||||||| || ||| |
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|
| T |
49857451 |
tagaatgggacatccagataaaagttttctgatatgtccataatatgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaa |
49857550 |
T |
|
| Q |
106 |
ggaacttcttcgttcaatgttaccctcttcaatttgaggac |
146 |
Q |
| |
|
||| |||| | ||||||||||| |||||||||||||||||| |
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|
| T |
49857551 |
ggaccttcatagttcaatgttatcctcttcaatttgaggac |
49857591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 49868709 - 49868793
Alignment:
| Q |
148 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
232 |
Q |
| |
|
|||||||||||| |||| ||||| |||| ||||||||| |||||||| | | |||||||||||||| ||||||||| |||||||| |
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|
| T |
49868709 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
49868793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 49760622 - 49760738
Alignment:
| Q |
27 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
126 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
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|
| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
127 |
accctcttcaatttgaggac |
146 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
49760719 |
atcctcttcaatttgaggac |
49760738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 31211027 - 31210971
Alignment:
| Q |
123 |
tgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
179 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |
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|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaaccaaagaagg |
31210971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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