View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9702_high_2 (Length: 414)

Name: NF9702_high_2
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9702_high_2
NF9702_high_2
[»] chr2 (13 HSPs)
chr2 (15-391)||(44623612-44623988)
chr2 (154-391)||(44614563-44614797)
chr2 (13-125)||(44614464-44614576)
chr2 (21-90)||(39136280-39136349)
chr2 (99-280)||(39458883-39459064)
chr2 (22-90)||(39422493-39422561)
chr2 (198-304)||(39473637-39473743)
chr2 (21-90)||(39488194-39488263)
chr2 (21-88)||(39458208-39458275)
chr2 (26-92)||(39129487-39129553)
chr2 (48-90)||(39474281-39474323)
chr2 (231-316)||(39389332-39389417)
chr2 (230-263)||(39390708-39390741)
[»] chr8 (2 HSPs)
chr8 (16-263)||(40347260-40347507)
chr8 (21-166)||(44951310-44951455)
[»] chr7 (1 HSPs)
chr7 (21-90)||(19806641-19806710)
[»] chr3 (1 HSPs)
chr3 (270-323)||(51574601-51574654)
[»] chr5 (1 HSPs)
chr5 (24-72)||(17058843-17058891)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 44623612 - 44623988
Alignment:
Q  15 ggacatcaagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatggagacccaagttaaggaagttg 114  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44623612 ggacaacaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatggagacccaagttaaggaatttg 44623711  T
Q  115 agagtgaaaagaatatacttgatggtcaagtaaatgagtttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaa 214  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623712 agactgaaaagaatatacttgatggtcaagtaaatgagtttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaa 44623811  T
Q  215 tttcgagagacgacaaaaggagtttgaatcaaaagaaaaggaatttgaaagaagagtgatggagttccaatcaaaagaagaggaatttaaagtccaagtg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44623812 tttcgagagacgacaaaaggagtttgaatcaaaagaaaaggaattcgaaataagagtgatggagttccaatcaaaagaagaggaatttaaagttcaagtg 44623911  T
Q  315 aaagtactttttgaagcaaaggaagagaaattcgaagtaaaaatgcagcaatttgaaaatcaagttgaggacaatct 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623912 aaagtactttttgaagcaaaggaagagaaattcgaagtaaaaatgcagcaatttgaaaatcaagttgaggacaatct 44623988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 154 - 391
Target Start/End: Original strand, 44614563 - 44614797
Alignment:
Q  154 ttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaatttcgagagacgacaaaaggagtttgaatcaaaagaaaa 253  Q
    |||| ||| ||||||||||||| ||||||||  ||  |||||||||||||||||| | | |||||||||| ||||||||||| |||||||||||||||||    
T  44614563 ttgagtctgaaaagggtgaatttgaaggcctggtggaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaa 44614662  T
Q  254 ggaatttgaaagaagagtgatggagttccaatcaaaagaagaggaatttaaagtccaagtgaaagtactttttgaagcaaaggaagagaaattcgaagta 353  Q
    |||||||||||||||||||| ||||||||| ||| |||| |||||||||||||  | ||||||   | | |||||| |||||| |||| |||| |||| |    
T  44614663 ggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaaggtcgagtgaa---aatgtttgaaacaaaggtagaggaatttgaagga 44614759  T
Q  354 aaaatgcagcaatttgaaaatcaagttgaggacaatct 391  Q
    |||||||||||| ||||||| |||  ||||||||||||    
T  44614760 aaaatgcagcaaattgaaaaccaaactgaggacaatct 44614797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 44614464 - 44614576
Alignment:
Q  13 atggacatcaagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatggagacccaagttaaggaagt 112  Q
    |||||||  ||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| | ||||||||| |    
T  44614464 atggacaaaaagtagaagagaggcaattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaact 44614563  T
Q  113 tgagagtgaaaag 125  Q
    ||||  |||||||    
T  44614564 tgagtctgaaaag 44614576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 39136280 - 39136349
Alignment:
Q  21 caagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 90  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||| ||||||||||||| || |||||||    
T  39136280 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaata 39136349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 280
Target Start/End: Original strand, 39458883 - 39459064
Alignment:
Q  99 caagttaaggaagttgagagtgaaaagaatatacttgatggtcaagtaaatgagtttgaatctaaaaagggtgaattggaaggcctattgagggactttg 198  Q
    |||||||||||| ||||| || || |||| | | ||||||||| || ||| ||| ||||||| ||| ||| |||||| |||||||   ||| ||| || |    
T  39458883 caagttaaggaacttgagtgtaaagagaagaaaattgatggtcgagcaaaggagattgaatcaaaagaggatgaatttgaaggccgggtgaaggagttgg 39458982  T
Q  199 aatcagaaaaaacgaatttcgagagacgacaaaaggagtttgaatcaaaagaaaaggaatttgaaagaagagtgatggagtt 280  Q
    |||||||||| | | ||||||||||  | |  |||||| | ||||||||||||||| |||||||| ||  ||||| ||||||    
T  39458983 aatcagaaaagaagcatttcgagagcaggctgaaggagctcgaatcaaaagaaaagcaatttgaaggacaagtgaaggagtt 39459064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 39422561 - 39422493
Alignment:
Q  22 aagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 90  Q
    |||||||||||| |  | ||| ||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  39422561 aagtagaagagaagatattgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaata 39422493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 39473743 - 39473637
Alignment:
Q  198 gaatcagaaaaaacgaatttcgagagacgacaaaaggagtttgaatcaaaagaaaaggaatttgaaagaagagtgatggagttccaatcaaaagaagagg 297  Q
    ||||||||||| | | |||||||||| | ||  |||||| | ||||||||||||||| ||||| |  ||  ||||| ||||||||| |||||||| ||||    
T  39473743 gaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggagg 39473644  T
Q  298 aatttaa 304  Q
    |||||||    
T  39473643 aatttaa 39473637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 39488263 - 39488194
Alignment:
Q  21 caagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 90  Q
    |||||||||||| || |||||| |||||||||||||||| ||||| ||||||   ||||||| |||||||    
T  39488263 caagtagaagaggggagactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaata 39488194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 39458208 - 39458275
Alignment:
Q  21 caagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaa 88  Q
    ||||||||||||| | || ||| ||| |||||||||||||||||| |||||||| |||| || |||||    
T  39458208 caagtagaagagaagagattgcagtccataaagagagatattgaggagtgctgcaaagatcttgaaaa 39458275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 39129487 - 39129553
Alignment:
Q  26 agaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatg 92  Q
    |||||||| | || ||| ||| |||||||||||||||||| |||||| | ||||||| |||||||||    
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaatatg 39129553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 39474323 - 39474281
Alignment:
Q  48 ataaagagagatattgagaagtgctgcgaagagctagaaaata 90  Q
    |||||||||||||||||| |||||| ||||||||| |||||||    
T  39474323 ataaagagagatattgaggagtgctccgaagagcttgaaaata 39474281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 39389417 - 39389332
Alignment:
Q  231 aaggagtttgaatcaaaagaaaaggaatttgaaagaagagtgatggagttccaatcaaaagaagaggaatttaaagtccaagtgaa 316  Q
    |||||| |||| ||||||||  || |||| ||| ||| ||||| |||||| ||||||||||| ||||||||| |||  ||||||||    
T  39389417 aaggagcttgagtcaaaagaggagaaattcgaaggaaaagtgaaggagtttcaatcaaaagaggaggaatttgaagaacaagtgaa 39389332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 39390741 - 39390708
Alignment:
Q  230 aaaggagtttgaatcaaaagaaaaggaatttgaa 263  Q
    ||||||||||||||||||||| ||||||||||||    
T  39390741 aaaggagtttgaatcaaaagagaaggaatttgaa 39390708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 40347260 - 40347507
Alignment:
Q  16 gacatcaagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatggagacccaagttaaggaagttga 115  Q
    |||| |||||| ||| ||||||| ||||||| || |||| || | |||||||||| ||| |||||||||||||||||||||||||||||||| || ||||    
T  40347260 gacaacaagtaaaagtgaggcgattgcggtccattaagaaagctgttgagaagtgttgcaaagagctagaaaatatggagacccaagttaagaaacttga 40347359  T
Q  116 gagtgaaaagaatatacttgatggtcaagtaaatgagtttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaat 215  Q
       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||  ||| |||||||||||||||||||  ||||    
T  40347360 atctgaaaagaatatacttgatggtcgagtaaatgagtttgaatctaaaaagggtgaatttgaatggctgatgaaggactttgaatcagaaaaattgaat 40347459  T
Q  216 ttcgagagacgacaaaaggagtttgaatcaaaagaaaaggaatttgaa 263  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  40347460 ttcgagagccgacaaaaggagtttgaatcaaaagaaaaggagtttgaa 40347507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 44951455 - 44951310
Alignment:
Q  21 caagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatggagacccaagttaaggaagttgagagtg 120  Q
    |||||||||||||||| | ||||| | ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||  |     
T  44951455 caagtagaagagaggcaattgcggccgataaagagagatattaagaagtgctgcgaagagcttgaaaataaggagacccaagttaatgaacttgagtcta 44951356  T
Q  121 aaaagaatatacttgatggtcaagtaaatgagtttgaatctaaaaa 166  Q
    ||||||||||||||  ||| | |||||| |||||||||||| ||||    
T  44951355 aaaagaatatacttattggccgagtaaaggagtttgaatctgaaaa 44951310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 19806641 - 19806710
Alignment:
Q  21 caagtagaagagaggcgactgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 90  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||| | ||||||||||| || |||||||    
T  19806641 caagtagaagagaggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaata 19806710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 51574601 - 51574654
Alignment:
Q  270 gtgatggagttccaatcaaaagaagaggaatttaaagtccaagtgaaagtactt 323  Q
    |||| ||||||  |||||||||| ||||| ||||||||||||||||| ||||||    
T  51574601 gtgaaggagtttgaatcaaaagaggaggactttaaagtccaagtgaaggtactt 51574654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 17058843 - 17058891
Alignment:
Q  24 gtagaagagaggcgactgcggtctataaagagagatattgagaagtgct 72  Q
    |||||||| | |||| ||| ||||||||||||||||||||| |||||||    
T  17058843 gtagaagaaaagcgattgcagtctataaagagagatattgataagtgct 17058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University