View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_high_7 (Length: 238)
Name: NF9702_high_7
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 23186049 - 23186244
Alignment:
| Q |
4 |
atatttttccactcaaaatctataacatgttaacttaaaagttgcttcacccacggcccacactaaacataatgtgtggattaaatcaatatctcagttg |
103 |
Q |
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| T |
23186049 |
atatttttccactcaaaatctataacgtgttaacttaaaagtagcttcatccacggcccacactaaacataatgtgtggattaaatcaatatctctgttg |
23186148 |
T |
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| Q |
104 |
tattttagtttaatgactttaatctgcttggaccaccaagatgctgaaatgggagact---tactattcaaagtctcctcaaataaattaattaat |
196 |
Q |
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| T |
23186149 |
tattttagtttaatgactttaatctgcttggaccaccaagatactgaaataggagacttactactattcaaagtctcctgaaataactaaattaat |
23186244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 23177011 - 23177141
Alignment:
| Q |
100 |
gttgtattttagtttaatgactttaatctgcttggaccaccaagatgctgaaatgggagacttactattcaaagtctcctcaaataaat-------taat |
192 |
Q |
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| T |
23177011 |
gttgtattttagtttaatgtctctaatctgcttggaccaccaagatgctgaaatgggagacttactattcaaagtctcctcaaataaattaattaataat |
23177110 |
T |
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| Q |
193 |
taatcaccaacatattatgccaagagttttg |
223 |
Q |
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| T |
23177111 |
taatcaccaacatattatgccaagagttttg |
23177141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 23171675 - 23171771
Alignment:
| Q |
100 |
gttgtattttagtttaatgactttaatctgcttggaccaccaagatgctgaaatgggagacttactattcaaagtctcctcaaataaattaattaat |
196 |
Q |
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| T |
23171675 |
gttgtattttagtttaatgactttaatcagcttggaccaccaagatggtgaaatgggagactcactattcaaagtctcctcaaataaatgaattaat |
23171771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23171546 - 23171655
Alignment:
| Q |
1 |
agtatatttttccactcaaaatctataacatgttaacttaaaagttgcttcacccacggcccacactaaacataatgtgtggattaaatcaatatctcag |
100 |
Q |
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| T |
23171546 |
agtatatttttccactcaaattctagaacgtgttaacttaaaagttgcttcacccacggcccacgttaaatataatgtgtggattaaatcaatatctatg |
23171645 |
T |
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| Q |
101 |
ttgtatttta |
110 |
Q |
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|||||||||| |
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| T |
23171646 |
ttgtatttta |
23171655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 23170799 - 23170877
Alignment:
| Q |
145 |
tgctgaaatgggagacttactattcaaagtctcctcaaataaattaattaatcaccaacatattatgccaagagttttg |
223 |
Q |
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| T |
23170799 |
tgctgaagtgtgagacttattactcaaagtctctttaaacaaagtaattaatccctaacatattatgccaagatttttg |
23170877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23176172 - 23176211
Alignment:
| Q |
1 |
agtatatttttccactcaaaatctataacatgttaactta |
40 |
Q |
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| T |
23176172 |
agtatatttttccattcaaaatctagaacatgttaactta |
23176211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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