View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_1 (Length: 653)
Name: NF9702_low_1
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_1 |
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| [»] scaffold0535 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 638
Target Start/End: Complemental strand, 31033409 - 31032779
Alignment:
| Q |
14 |
caaaggagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataagga |
113 |
Q |
| |
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|||| ||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
31033409 |
caaatgagggaggtgagagtacaaaac---agtgtaaggaccattggtggaaagcacatctttaactgtcaagttcaagtcatggatgtctatgtaagga |
31033313 |
T |
|
| Q |
114 |
ggaaaagacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattta |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
31033312 |
ggaaaagacactaagaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccaaatgccaagagaatccgtctttgagagcattta |
31033213 |
T |
|
| Q |
214 |
ttgagtgatctaaaggggtaaacatgactcatgtatgtacataaaagacaaaatcannnnnnngcatctccattagttctgnnnnnnntcattatatata |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
31033212 |
ttgagtgatctaaaggggtaaacatgactcatgtatgtacataaaagacaaaatca-ttttttgcatctccattagttctgaaaaaaatcattatatat- |
31033115 |
T |
|
| Q |
314 |
aaattgatacacaaatttatcgtttttacatcaaaagaagaaaaactatgactaagtttctcaagtttgtttattttctgatgagcttgatttccacatt |
413 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033114 |
aaattaatacacaaatttatcttttttacatcaaaagaagaaaaaatatgagtaagtttctcaagtttgtttattttctgatgagcttgatttccacatt |
31033015 |
T |
|
| Q |
414 |
ttttgttgtaaggcacggtaactcaggtatgacctttctctcatccttttcaaatttttgctttaccttatacatg-----------catatgttaatat |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
31033014 |
ttttgttgtaaggcacggtaactcaggtatgacctttctctcatccttttcaaatttttgctttacattatacatgcatttttaccccatatgttaatat |
31032915 |
T |
|
| Q |
503 |
tggttacttctttgttatacattacagcatcacctaaatattgtatgcacggcgatgattgtaatattttgtgtcctaatcctttgatgggaatttgtac |
602 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31032914 |
tgattacttctttgttatacattacagcatcacctaaatattgtatgcacggcgatgattgtaatattttgtgtcctaatcctttgatgggaatttgtac |
31032815 |
T |
|
| Q |
603 |
tgattatcaatgtatatgtatgtaacggttaaagat |
638 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||| |
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| T |
31032814 |
tgattatcaatgtatatgtatataactgttaaagat |
31032779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 463
Target Start/End: Original strand, 31027882 - 31028034
Alignment:
| Q |
314 |
aaattgatacacaaatttatcgtttttacatcaaaagaagaaaaac---tatgactaagtttctcaagtttgtttattttctgatgagcttgatttccac |
410 |
Q |
| |
|
||||||||| | | ||||||| |||| |||||||||| ||||||| ||||| |||||||||||| ||| ||||| | ||| | ||||||||||| |
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| T |
31027882 |
aaattgatataaacatttatctttttaacatcaaaaggagaaaaaaaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatttccat |
31027981 |
T |
|
| Q |
411 |
attttttgttgtaaggcacggtaactcaggtatgacctttctctcatcctttt |
463 |
Q |
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|||||||||||||||| | | | ||| ||||||||||||| || |||||||| |
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| T |
31027982 |
attttttgttgtaagggatgaaagctctggtatgacctttcactaatcctttt |
31028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 41385964 - 41385766
Alignment:
| Q |
14 |
caaaggagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataagga |
113 |
Q |
| |
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|||||||||||| ||||||||||||| || ||||| |||| |||| || ||| ||||||| |||||||| | | |||||||||||||||||| |||||| |
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| T |
41385964 |
caaaggagggaggtgagagtacaaaacctaagtgtgaggaatattggtgtagatcacatctctaactgtcgaatgcaagtcgtggatgtctatttaagga |
41385865 |
T |
|
| Q |
114 |
ggaaaagacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
212 |
Q |
| |
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|||| ||| ||||||| ||| |||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| |||||||||||||||||| |
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| T |
41385864 |
ggaagggaccttatgaaatcaagggagctccaaggacaaaaccaaaatgaagaaatacatgatcccacacaccaagagaaaccgtctttgagagcattt |
41385766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 27849180 - 27849373
Alignment:
| Q |
19 |
gagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaa |
118 |
Q |
| |
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||||||| ||||||||||||| |||||||| ||| ||||| |||| |||||||| ||||||||||| | |||||| || |||||||| || ||| || |
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| T |
27849180 |
gagggaggtgagagtacaaaacctgagtgtgagggtcattggtggatagcacatccttaactgtcaactgcaagtcatgtatgtctatgtagggaacaat |
27849279 |
T |
|
| Q |
119 |
agacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
212 |
Q |
| |
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||| ||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| || ||||||||| ||||| |
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| T |
27849280 |
agatcctaagaattcaagggagctccaaggacaaaaccaaaaggaagaattacctgatcccgcgcgccaagagaaaccatctttgagaacattt |
27849373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0535 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0535
Description:
Target: scaffold0535; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 2905 - 2718
Alignment:
| Q |
18 |
ggagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaa |
117 |
Q |
| |
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|||||||| ||||||| ||| |||||||| ||||||||| ||||||| ||||| |||| ||||||| ||| || || || ||||| || ||| || |
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| T |
2905 |
ggagggaggtgagagttcaagtcctgagtgtgtggaccattggtggagaggacatccctaacggtcaagtgcaaatcatgaatatctatgtagggaaaaa |
2806 |
T |
|
| Q |
118 |
aagacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgag |
205 |
Q |
| |
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||| ||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||| || | ||||| ||| || |||||||| |
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| T |
2805 |
tagagcctaagaaatcaagggagctccaaggacaaaaccaaaaggaagaactaccagatcctgcgcgccaagtgaaaccatctttgag |
2718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 24132288 - 24132452
Alignment:
| Q |
48 |
taaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacactatgaaaccaaaggagctccaag |
147 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||| ||||||| ||| || || |||||||| || || || || ||| ||| |||| ||||||||||| |
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| T |
24132288 |
taaggaccattggtggagaggacatctctaatagtcaagtgcaaatcatgaatgtctatgtaggggacaatggagcctaagaagccaagggagctccaag |
24132387 |
T |
|
| Q |
148 |
gacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
212 |
Q |
| |
|
|||||||||||||||||||| |||| || |||| | ||||| ||| || ||||||||||||||| |
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|
| T |
24132388 |
gacaaaaccaaaaggaagaattaccagaacccgagcgccaagtgaaaccatctttgagagcattt |
24132452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 14292756 - 14292708
Alignment:
| Q |
130 |
aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcc |
178 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
14292756 |
aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatcc |
14292708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 14308805 - 14308757
Alignment:
| Q |
130 |
aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcc |
178 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
14308805 |
aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatcc |
14308757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 18346054 - 18345988
Alignment:
| Q |
137 |
ggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttg |
203 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| | |||||||| || || |||||| |
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|
| T |
18346054 |
ggagctccaaggacaagaccaaaaagaagaactacctgatcccactcaccaagataaaccctctttg |
18345988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 45716455 - 45716502
Alignment:
| Q |
130 |
aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatc |
177 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |||| |
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|
| T |
45716455 |
aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatc |
45716502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 18900393 - 18900329
Alignment:
| Q |
148 |
gacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
212 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| |||||| || || ||||| ||||||||| |
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|
| T |
18900393 |
gacaagaccaaaaggaagaactacctgaacccgcacgccaagaaaaaccttctttcagagcattt |
18900329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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