View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9702_low_11 (Length: 334)

Name: NF9702_low_11
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9702_low_11
NF9702_low_11
[»] chr7 (21 HSPs)
chr7 (1-327)||(5290528-5290842)
chr7 (30-135)||(8309810-8309914)
chr7 (4-135)||(17879743-17879873)
chr7 (8-77)||(29936080-29936149)
chr7 (248-321)||(5301708-5301782)
chr7 (19-105)||(21019387-21019472)
chr7 (30-117)||(20052750-20052835)
chr7 (15-107)||(18418670-18418764)
chr7 (248-288)||(5283570-5283610)
chr7 (19-90)||(19141718-19141790)
chr7 (19-90)||(20741117-20741189)
chr7 (19-77)||(13175296-13175355)
chr7 (110-144)||(4447057-4447091)
chr7 (8-77)||(11792263-11792333)
chr7 (19-77)||(13681881-13681939)
chr7 (19-107)||(18440755-18440845)
chr7 (30-91)||(19143479-19143539)
chr7 (9-77)||(19711745-19711814)
chr7 (30-91)||(20742878-20742938)
chr7 (8-72)||(39285242-39285307)
chr7 (19-136)||(1878895-1879013)
[»] chr2 (22 HSPs)
chr2 (12-130)||(33014060-33014177)
chr2 (20-135)||(24109987-24110099)
chr2 (31-163)||(12060401-12060534)
chr2 (10-91)||(28789913-28789994)
chr2 (8-77)||(18702093-18702163)
chr2 (16-77)||(38040586-38040648)
chr2 (30-91)||(8684997-8685057)
chr2 (8-77)||(25828515-25828584)
chr2 (2-91)||(26655340-26655430)
chr2 (19-77)||(23393345-23393404)
chr2 (8-77)||(24376459-24376529)
chr2 (2-91)||(27766170-27766259)
chr2 (16-77)||(38033427-38033489)
chr2 (8-46)||(38631106-38631144)
chr2 (8-77)||(14794468-14794537)
chr2 (30-91)||(21770297-21770357)
chr2 (30-91)||(21822977-21823037)
chr2 (109-138)||(33240232-33240261)
chr2 (109-138)||(33248153-33248182)
chr2 (22-77)||(19498585-19498641)
chr2 (19-91)||(19878575-19878647)
chr2 (19-91)||(23958920-23958992)
[»] chr4 (27 HSPs)
chr4 (4-132)||(8501840-8501968)
chr4 (28-135)||(13977895-13978000)
chr4 (22-135)||(12235717-12235829)
chr4 (20-135)||(43357702-43357816)
chr4 (2-91)||(19052696-19052779)
chr4 (26-215)||(46978989-46979179)
chr4 (8-63)||(12600112-12600167)
chr4 (2-109)||(19556053-19556157)
chr4 (22-109)||(22223440-22223525)
chr4 (8-77)||(3395002-3395072)
chr4 (8-77)||(6641037-6641106)
chr4 (19-77)||(31267399-31267457)
chr4 (22-91)||(15736190-15736259)
chr4 (9-91)||(22317360-22317443)
chr4 (8-56)||(8686154-8686202)
chr4 (8-71)||(37986307-37986371)
chr4 (19-77)||(14711385-14711444)
chr4 (19-77)||(14779049-14779108)
chr4 (19-77)||(19241613-19241672)
chr4 (21-166)||(15522014-15522159)
chr4 (16-77)||(36210716-36210778)
chr4 (16-120)||(39532265-39532370)
chr4 (19-72)||(17994365-17994418)
chr4 (20-72)||(5718893-5718945)
chr4 (23-91)||(15366282-15366350)
chr4 (31-71)||(17133350-17133390)
chr4 (19-63)||(33377773-33377817)
[»] chr5 (13 HSPs)
chr5 (19-135)||(22185443-22185558)
chr5 (9-135)||(26013205-26013329)
chr5 (30-128)||(17241057-17241157)
chr5 (22-143)||(19903036-19903154)
chr5 (22-80)||(24495190-24495248)
chr5 (9-77)||(9399329-9399398)
chr5 (30-91)||(22747802-22747862)
chr5 (19-77)||(20215829-20215888)
chr5 (19-77)||(23477741-23477800)
chr5 (19-77)||(23487917-23487976)
chr5 (19-77)||(40033451-40033510)
chr5 (8-77)||(643413-643483)
chr5 (8-77)||(13546234-13546304)
[»] scaffold0010 (2 HSPs)
scaffold0010 (21-144)||(135602-135723)
scaffold0010 (19-77)||(61099-61158)
[»] chr3 (22 HSPs)
chr3 (8-215)||(19264087-19264293)
chr3 (38-135)||(27685507-27685604)
chr3 (9-91)||(4500950-4501033)
chr3 (9-91)||(19905286-19905368)
chr3 (8-76)||(16031953-16032021)
chr3 (48-109)||(11073852-11073912)
chr3 (16-80)||(13292237-13292301)
chr3 (9-80)||(14427701-14427773)
chr3 (11-71)||(47596623-47596683)
chr3 (18-77)||(49989628-49989688)
chr3 (11-89)||(4234846-4234922)
chr3 (19-77)||(13147661-13147720)
chr3 (19-77)||(13953631-13953690)
chr3 (19-77)||(15832776-15832835)
chr3 (19-77)||(31114594-31114653)
chr3 (22-108)||(10917655-10917738)
chr3 (8-77)||(13931353-13931423)
chr3 (48-106)||(16201833-16201889)
chr3 (8-77)||(20724445-20724515)
chr3 (19-91)||(17035123-17035195)
chr3 (8-88)||(17239643-17239724)
chr3 (16-80)||(13362906-13362970)
[»] chr1 (23 HSPs)
chr1 (11-85)||(21721631-21721705)
chr1 (31-130)||(16422789-16422887)
chr1 (9-91)||(30497418-30497500)
chr1 (51-135)||(9558749-9558830)
chr1 (2-80)||(12397193-12397266)
chr1 (22-91)||(12669815-12669883)
chr1 (15-72)||(14969203-14969260)
chr1 (22-91)||(19019845-19019913)
chr1 (8-77)||(28492935-28493004)
chr1 (21-76)||(19965857-19965911)
chr1 (19-77)||(21541172-21541231)
chr1 (19-77)||(22018699-22018758)
chr1 (19-77)||(23926430-23926489)
chr1 (19-77)||(26548911-26548970)
chr1 (8-46)||(2834014-2834052)
chr1 (8-77)||(12283779-12283849)
chr1 (19-107)||(18311587-18311677)
chr1 (19-72)||(22642231-22642285)
chr1 (21-71)||(31587494-31587544)
chr1 (16-77)||(45071247-45071309)
chr1 (22-91)||(12439920-12439988)
chr1 (38-91)||(25517021-25517074)
chr1 (20-68)||(31910706-31910754)
[»] chr6 (19 HSPs)
chr6 (22-91)||(34659352-34659420)
chr6 (8-91)||(15478452-15478536)
chr6 (22-80)||(20396309-20396367)
chr6 (22-72)||(30701958-30702008)
chr6 (8-80)||(20395977-20396050)
chr6 (8-91)||(19470025-19470109)
chr6 (19-77)||(7586877-7586936)
chr6 (3-65)||(11704714-11704777)
chr6 (20-91)||(15586078-15586149)
chr6 (19-77)||(17609027-17609086)
chr6 (22-77)||(20395674-20395729)
chr6 (19-77)||(20635090-20635149)
chr6 (19-77)||(21127600-21127659)
chr6 (16-77)||(12953716-12953778)
chr6 (22-80)||(20395319-20395377)
chr6 (9-50)||(1830091-1830132)
chr6 (19-71)||(17742322-17742375)
chr6 (17-88)||(12347459-12347531)
chr6 (8-71)||(24729246-24729310)
[»] chr8 (16 HSPs)
chr8 (22-135)||(18565355-18565467)
chr8 (16-77)||(40002584-40002646)
chr8 (20-80)||(30213742-30213802)
chr8 (8-77)||(19942586-19942656)
chr8 (16-77)||(23271817-23271879)
chr8 (1-71)||(20311184-20311255)
chr8 (1-71)||(21104821-21104892)
chr8 (19-77)||(23363715-23363774)
chr8 (19-77)||(29378968-29379027)
chr8 (99-141)||(20049770-20049812)
chr8 (57-135)||(20084808-20084884)
chr8 (9-91)||(13644640-13644723)
chr8 (9-91)||(13745065-13745148)
chr8 (16-65)||(22212012-22212061)
chr8 (30-91)||(23433631-23433691)
chr8 (9-77)||(18557402-18557470)
[»] scaffold0103 (1 HSPs)
scaffold0103 (2-91)||(16058-16147)
[»] scaffold0026 (1 HSPs)
scaffold0026 (8-77)||(7284-7353)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-91)||(382158-382241)
[»] scaffold0177 (1 HSPs)
scaffold0177 (18-77)||(21057-21117)
[»] scaffold1507 (1 HSPs)
scaffold1507 (19-77)||(32-91)
[»] scaffold0771 (1 HSPs)
scaffold0771 (19-77)||(5771-5830)
[»] scaffold0655 (1 HSPs)
scaffold0655 (19-77)||(4485-4544)
[»] scaffold0443 (1 HSPs)
scaffold0443 (19-77)||(1655-1714)
[»] scaffold0050 (1 HSPs)
scaffold0050 (19-77)||(34986-35045)
[»] scaffold1747 (1 HSPs)
scaffold1747 (8-77)||(680-750)
[»] scaffold1745 (1 HSPs)
scaffold1745 (8-77)||(661-731)
[»] scaffold1657 (1 HSPs)
scaffold1657 (11-77)||(1204-1270)
[»] scaffold0570 (1 HSPs)
scaffold0570 (16-77)||(2356-2418)
[»] scaffold0544 (1 HSPs)
scaffold0544 (16-77)||(10405-10467)
[»] scaffold0497 (1 HSPs)
scaffold0497 (19-107)||(10897-10987)
[»] scaffold0163 (1 HSPs)
scaffold0163 (8-77)||(25818-25888)
[»] scaffold0017 (2 HSPs)
scaffold0017 (16-77)||(59540-59602)
scaffold0017 (19-107)||(174937-175027)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-77)||(268145-268211)
[»] scaffold0530 (1 HSPs)
scaffold0530 (8-77)||(2699-2768)
[»] scaffold0146 (1 HSPs)
scaffold0146 (8-88)||(14476-14557)
[»] scaffold0035 (1 HSPs)
scaffold0035 (8-72)||(20157-20222)
[»] scaffold1551 (1 HSPs)
scaffold1551 (23-91)||(1054-1122)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 5290842 - 5290528
Alignment:
Q  1 tagagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290842 tagagagaagacagaaaacaattatactagttcctcccacaaatcgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatat 5290743  T
Q  101 attacaatttgctcaagcacacaagcaagagacttatattgctctcatacaagaaatagacttttatcgctcaatcacacagaaaagagacgtctccaat 200  Q
    |||||||||||||||||            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  5290742 attacaatttgctcaag------------agacttatattgctctcatacaagaaatagacttttatcactcaatcacacagaaaagagacttctccaat 5290655  T
Q  201 ctaacttaataaaatcaaatcaaataaaagattgttggtagtctctctcttcaaagaaatgcggggtatttcccaccaaactccaacagattcaagtatg 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||    
T  5290654 ctaacttaatcaaatcaaatcaaataaaagattgttggtagtctctctcttcaaagaaatgcggggtatttcccaccaaacaccaacagggtcaagtatg 5290555  T
Q  301 gtcaaaccacccagccagccattatat 327  Q
    | |||| || |||||||||||||||||    
T  5290554 gacaaagcagccagccagccattatat 5290528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 8309914 - 8309810
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcactt-ctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaa 128  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||| |||||||   |||||||||| |||||| ||| ||||||    
T  8309914 gttcctcccacaaaccgagagtagtccaatccccttgcacttccaaagggat-ttcactat-aatctcacgaattacaattttctcaagtacaaaagcaa 8309817  T
Q  129 gagactt 135  Q
    || ||||    
T  8309816 gatactt 8309810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 17879743 - 17879873
Alignment:
Q  4 agagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatatt 103  Q
    ||||| ||||||| | ||||||  | ||||| |||||||||| | |||||| || ||| |||||||||||||| ||| |||||||| ||||| | |||||    
T  17879743 agagacgacacaagaaaattatgttggttccacccacaaaccaacagtagtacaatccacttgcacttctaagagattttcactat-aatcttacatatt 17879841  T
Q  104 acaatttgctcaagcacacaagcaagagactt 135  Q
    |||||||| | || |||||||| |||||||||    
T  17879842 acaatttgtttaaacacacaagtaagagactt 17879873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 29936149 - 29936080
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||| ||||||||||||||| ||||    
T  29936149 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtccccttgcacttccaagg 29936080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 5301708 - 5301782
Alignment:
Q  248 tcttcaaagaaatgcggggtatttcccaccaaactccaacagattcaagt-atggtcaaaccacccagccagcca 321  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||| |||| |||| || |||||||||||    
T  5301708 tcttcaaagacacgcggggtatttcccaccaaactccaacagggtcaagtaatggacaaagcagccagccagcca 5301782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 21019387 - 21019472
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattac 105  Q
    |||||||| | |||||| |||||||||||||||||| |||| |||||| ||||| ||||||| || ||||| ||||||| |||||||    
T  21019387 caattatattggttccttccacaaaccgagagtagttcagttcccttgtacttccaagggattttaactat-aatctcacatattac 21019472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 20052750 - 20052835
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaag 117  Q
    |||||||||||||| | ||||||||| ||| ||||||||||||| |||||| |||||||| |||| | || ||||||| |||||||||    
T  20052750 gttcctcccacaaaacaagagtagtctagttcccttgcacttcttagggat-ttcactat-aatcacttagattacaacttgctcaag 20052835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 18418670 - 18418764
Alignment:
Q  15 aaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 107  Q
    ||||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  ||||||| | |||||||    
T  18418670 aaaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatctcaaagattacaa 18418764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 5283570 - 5283610
Alignment:
Q  248 tcttcaaagaaatgcggggtatttcccaccaaactccaaca 288  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  5283570 tcttcaaagacatgcggggtgtttcccaccaaactccaaca 5283610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 19141718 - 19141790
Alignment:
Q  19 caattatactagttcctcccacaaa-ccgagagtagtccagtccccttgcacttctaagggatgttcactata 90  Q
    |||||||||| |||||||| ||||| || |||||||||||  || |||||||||| ||||||| |||||||||    
T  19141718 caattatactggttcctcctacaaatccaagagtagtccaaccctcttgcacttccaagggattttcactata 19141790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 20741117 - 20741189
Alignment:
Q  19 caattatactagttcctcccacaaa-ccgagagtagtccagtccccttgcacttctaagggatgttcactata 90  Q
    |||||||||| |||||||| ||||| || |||||||||||  || |||||||||| ||||||| |||||||||    
T  20741117 caattatactggttcctcctacaaatccaagagtagtccaaccctcttgcacttccaagggattttcactata 20741189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 13175355 - 13175296
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  13175355 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 13175296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 4447057 - 4447091
Alignment:
Q  110 tgctcaagcacacaagcaagagacttatattgctc 144  Q
    |||||||||||||||||||||||||| ||||||||    
T  4447057 tgctcaagcacacaagcaagagacttctattgctc 4447091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 11792263 - 11792333
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  11792263 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcttgtcccccttgcacttccaagg 11792333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 13681881 - 13681939
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    ||||||| || |||||| ||||||||||  |||||||||| ||||||||||||| ||||    
T  13681881 caattatcctggttccttccacaaaccggaagtagtccagaccccttgcacttcgaagg 13681939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 18440755 - 18440845
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 107  Q
    ||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  ||||||| | |||||||    
T  18440755 caattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatctcaaagattacaa 18440845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 19143539 - 19143479
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||  | |||||||| |||| |||||||||||| ||||||| ||||||||||    
T  19143539 gttcctcccacaacacaagagtagttcagttcccttgcacttccaagggat-ttcactataa 19143479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 19711814 - 19711745
Alignment:
Q  9 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||| |||||||||| |||||| ||| |||||   ||||||||||| ||||||||||||| ||||    
T  19711814 agacacaaagcaattatactggttccttccataaaccagaagtagtccagtcccccttgcacttccaagg 19711745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 20742938 - 20742878
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||  | |||||||| |||| |||||||||||| ||||||| ||||||||||    
T  20742938 gttcctcccacaacacaagagtagttcagttcccttgcacttccaagggat-ttcactataa 20742878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 39285307 - 39285242
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttc 72  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||| ||| ||||| ||||||    
T  39285307 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtctcccttccacttc 39285242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 1879013 - 1878895
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagg-gatgttcactataaatctcatat-attacaatttgctca 115  Q
    ||||||| || |||||| ||||||  ||  |||||||||| |||| ||||||||| |||| ||| |||||||||| || ||||  |||||||||| ||||    
T  1879013 caattatcctggttccttccacaattcggaagtagtccagccccccttgcacttccaaggagattttcactataa-tcacataagattacaattt-ctca 1878916  T
Q  116 agcacacaagcaagagactta 136  Q
    |||||| ||||||||||||||    
T  1878915 agcacagaagcaagagactta 1878895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 33014177 - 33014060
Alignment:
Q  12 cacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttg 111  Q
    |||||| |||||||| | |||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||||| ||||||||| |||    
T  33014177 cacaaagcaattatattggttcctcccacaaatcgagagtagttcaatccccttgcacttttaaggggttttcactat-aatctcacatattacaaattg 33014079  T
Q  112 ctcaagcacacaagcaaga 130  Q
    |||||||||||| ||||||    
T  33014078 ctcaagcacacaggcaaga 33014060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 24110099 - 24109987
Alignment:
Q  20 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagca 119  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||||  |||||| |||| |||  |||||| | ||||||| ||   ||||||    
T  24110099 aattatattggttcctcccacaaaccaagagtagtccagtccccttgcacttcctagggat-ttcattat--atctcaaagattacaaattttgcaagca 24110003  T
Q  120 cacaagcaagagactt 135  Q
    ||||||||||| ||||    
T  24110002 cacaagcaagatactt 24109987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 12060401 - 12060534
Alignment:
Q  31 ttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaaga 130  Q
    ||||| |||||||||||||||||| |||||||||| || ||  ||  ||| |||||||| ||||||| ||||||||| |||||||| |||||||| ||||    
T  12060401 ttccttccacaaaccgagagtagttcagtccccttacattttcaaaagattttcactat-aatctcacatattacaaattgctcaaacacacaagtaaga 12060499  T
Q  131 gacttatattgctc--tcatacaagaaatagactt 163  Q
    | ||| | ||||||  ||| |||||||| ||||||    
T  12060500 ggcttcttttgctcaatcacacaagaaaaagactt 12060534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 28789994 - 28789913
Alignment:
Q  10 gacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||||||||||||| | ||||||||||| ||  |||||||||| |||||||||||||||| || | || ||||||||||    
T  28789994 gacacaaaacaattatattggttcctcccacgaattgagagtagtcaagtccccttgcacttcaaatgaattttcactataa 28789913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 18702093 - 18702163
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||||  || ||||||||||||| ||||    
T  18702093 aagacacaaaacaattatacaggttccttccacaaaccgaaagtagtcatgtcccccttgcacttccaagg 18702163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 38040648 - 38040586
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 77  Q
    ||||||||||||| |||||| ||||||||||  |||||||||||| |||||||||||| ||||    
T  38040648 aaacaattatactggttccttccacaaaccggaagtagtccagtctcccttgcacttccaagg 38040586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 8684997 - 8685057
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||  |  ||||||||||||||||||||||||| ||||||| ||||||||||    
T  8684997 gttcctcccacaacacaggagtagtccagtccccttgcacttccaagggat-ttcactataa 8685057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 25828515 - 25828584
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||| | ||||||||||||| ||||    
T  25828515 aagacacaaaccaattatacaggttccttccacaaaccggaagtagtcctgcccccttgcacttccaagg 25828584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 26655430 - 26655340
Alignment:
Q  2 agagagaagacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||| ||||||||| |||||  ||||| |||||||||||||  |  |||| |||||||||||||||||||  ||||||| ||||||||||    
T  26655430 agagaggagacacaaagcaattttatactggttcctcccacaacacaggagtggtccagtccccttgcactttcaagggat-ttcactataa 26655340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 23393404 - 23393345
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23393404 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23393345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24376459 - 24376529
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagg 77  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||  |||||| ||||||||||||||    
T  24376459 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcatgtcccccttgcacttctaagg 24376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 27766259 - 27766170
Alignment:
Q  2 agagagaagacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||| | |||||| |||||| ||||| |||||||| |||||||   ||||||||||||||||| |||||| |||| || ||||||||||    
T  27766259 agagagcatacacaagacaatttatacttgttcctcctacaaaccagaagtagtccagtccccttacacttccaaggaat-ttcactataa 27766170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 38033489 - 38033427
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 77  Q
    ||||||||||||| |||||| |||||||||   |||||||||||| |||||||||||| ||||    
T  38033489 aaacaattatactggttccttccacaaaccagaagtagtccagtctcccttgcacttccaagg 38033427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 38631106 - 38631144
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccg 46  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  38631106 aagacacaaaacaattatacaagttccttccacaaaccg 38631144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 14794537 - 14794468
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    |||||||||| ||||||| || |||||| | ||||  ||  |||||||||||||||||||||||| ||||    
T  14794537 aagacacaaaccaattatcctggttccttcaacaattcggaagtagtccagtccccttgcacttccaagg 14794468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 21770357 - 21770297
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||   | ||||| ||||||||||||||||||||||| ||| ||||||||||    
T  21770357 gttcctcccacaacatgggagtaatccagtccccttgcacttctaagagat-ttcactataa 21770297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 21822977 - 21823037
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||  |  ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  21822977 gttcctcccacaacacaggagtagtccagtcccattgcacttccaagggat-ttcactataa 21823037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 33240232 - 33240261
Alignment:
Q  109 ttgctcaagcacacaagcaagagacttata 138  Q
    ||||||||||||||||||||||||||||||    
T  33240232 ttgctcaagcacacaagcaagagacttata 33240261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 33248153 - 33248182
Alignment:
Q  109 ttgctcaagcacacaagcaagagacttata 138  Q
    ||||||||||||||||||||||||||||||    
T  33248153 ttgctcaagcacacaagcaagagacttata 33248182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 19498641 - 19498585
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  19498641 ttatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 19498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 19878647 - 19878575
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||| | |||||| | |||| ||  ||||||||||||||||||| | ||| ||||||| ||||||||||    
T  19878647 caattataatggttccttctacaatccaggagtagtccagtccccttgaatttcaaagggattttcactataa 19878575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 23958920 - 23958992
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||| | |||||||  |||| ||  ||||||||||||||||||||||||| ||| ||| |||| |||||    
T  23958920 caattatattggttcctcttacaatccaggagtagtccagtccccttgcacttccaagagattttcattataa 23958992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 8501840 - 8501968
Alignment:
Q  4 agagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctca-tatat 102  Q
    ||||| ||||||| | |||||||||  |||||| ||||||||||||||||||||| ||||||||||||| |||| || || ||||| ||||||| || ||    
T  8501840 agagacgacacaagaaaattatactgattcctctcacaaaccgagagtagtccagaccccttgcacttccaaggaatttttactat-aatctcactagat 8501938  T
Q  103 tacaatttgctcaagcacacaagcaagaga 132  Q
    ||||||||||| || |||| ||| ||||||    
T  8501939 tacaatttgcttaaacacataagtaagaga 8501968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 13978000 - 13977895
Alignment:
Q  28 tagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctc-atatattacaatttgctcaagcacacaagc 126  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||| || |||||||| |||| | | | |||||||  |||||||||||||||||    
T  13978000 tagttcctctcacaaaccgagagtagtctagtccccttgcacttc-aaggaattttcactat-aatcactaaagattacaa-atgctcaagcacacaagc 13977904  T
Q  127 aagagactt 135  Q
    |||||||||    
T  13977903 aagagactt 13977895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 12235717 - 12235829
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctc-atatattacaatttgctcaagcac 120  Q
    ||||||||||||||| |||||||||||||||||| || || |||||||||  |||| || |||| ||| |||| | | ||||||||| ||||||||||||    
T  12235717 ttatactagttcctctcacaaaccgagagtagtctagaccacttgcactttcaaggcattttcattat-aatcactaaatattacaa-ttgctcaagcac 12235814  T
Q  121 acaagcaagagactt 135  Q
    ||||| |||||||||    
T  12235815 acaagaaagagactt 12235829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 43357702 - 43357816
Alignment:
Q  20 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagca 119  Q
    ||||||||||||||||| |||| | ||||||||||||| ||  |||||||||| || | || |||||||| ||||||  | |||||||||| ||||| ||    
T  43357702 aattatactagttcctctcacagatcgagagtagtccaatcaacttgcacttccaaagaattttcactat-aatctcccaaattacaattttctcaaaca 43357800  T
Q  120 cacaagcaagagactt 135  Q
    |||||| || ||||||    
T  43357801 cacaagtaaaagactt 43357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 19052696 - 19052779
Alignment:
Q  2 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||| ||||||||| |||| ||||| |||||||| ||||     ||||||||||||||||||||||||| ||||||| ||||||||||    
T  19052696 agagagcagacacaaatcaatcatactggttcctcctacaa-----gagtagtccagtccccttgcacttccaagggat-ttcactataa 19052779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 46978989 - 46979179
Alignment:
Q  26 actagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaag 125  Q
    ||||||||||  ||||||||||||||||||  ||||| ||| ||||| ||| ||| || ||||||| || |  | ||| ||| | |||||||||||| |     
T  46978989 actagttccttacacaaaccgagagtagtctggtcccattgaacttcaaagagatttttactataa-tcactaagattgcaaat-gctcaagcacacgaa 46979086  T
Q  126 caagagacttatattgctc--tcatacaagaaatagacttttatcgctcaatcaca-cagaaaagagacgtctccaatctaacttaataaaat 215  Q
    ||||| |||| | ||||||  ||| | |||||||||||||||   ||||||||||| | |||||||||| ||| |||||||||||||| ||||    
T  46979087 caagatacttctgttgctcaatcacataagaaatagactttttctgctcaatcacaactgaaaagagacttctacaatctaacttaatcaaat 46979179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 12600112 - 12600167
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc 63  Q
    |||||||||||||||||||| ||||||| ||||||||||  |||||||| ||||||    
T  12600112 aagacacaaaacaattatacaagttccttccacaaaccggaagtagtcctgtcccc 12600167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 19556157 - 19556053
Alignment:
Q  2 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatata 101  Q
    |||||| |||||||||  | ||||||| ||||||||||| |||  | |||||||||||||| ||||||||| || | || |||||||| |||||||||||    
T  19556157 agagagcagacacaaacaatttatactggttcctcccac-aacacaaagtagtccagtcccgttgcacttccaatgaat-ttcactat-aatctcatata 19556061  T
Q  102 ttacaatt 109  Q
    ||||||||    
T  19556060 ttacaatt 19556053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 22223525 - 22223440
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatt 109  Q
    ||||||| |||||||||||||  |  |||||||| ||||| |||||||||| ||||||| |||||||| ||||||| |||||||||||    
T  22223525 ttatactggttcctcccacaacacaggagtagtcaagtcctcttgcacttccaagggat-ttcactat-aatctcacatattacaatt 22223440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 3395002 - 3395072
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccc-cttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||||  ||||| |||||||||| ||||    
T  3395002 aagacacaaaacaattatacaggttccttccacaaaccgaaagtagtcatgtccctcttgcacttccaagg 3395072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 6641037 - 6641106
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||||  || ||||||||||||| ||||    
T  6641037 aagacacaaaacaattatacaagttccttccacaaaccga-agtagtcatgtcccccttgcacttccaagg 6641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 31267457 - 31267399
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    ||||||| || |||||| ||||||||||  |||||||||||||||||||||||| ||||    
T  31267457 caattatcctggttccttccacaaaccggaagtagtccagtccccttgcacttccaagg 31267399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 15736190 - 15736259
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||||||||||| ||||||||||||||||||   || ||||||||||| | | ||| ||||||||||    
T  15736190 ttatactagttcctctcacaaaccgagagtagtcttatcgccttgcacttccatgagattttcactataa 15736259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 22317443 - 22317360
Alignment:
Q  9 agacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||||  ||||| |||||||| |||| ||  ||||||||||||| | ||||||||| ||||||| ||||||||||    
T  22317443 agacacaaaacaattttatactggttcctcctacaatccaggagtagtccagtctcattgcacttccaagggat-ttcactataa 22317360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 8686202 - 8686154
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtcc 56  Q
    |||||||||||||||||||| ||||||| ||||||||||  ||||||||    
T  8686202 aagacacaaaacaattatacaagttccttccacaaaccggaagtagtcc 8686154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 37986371 - 37986307
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcactt 71  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||| || ||||||||||||    
T  37986371 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtcccccttgcactt 37986307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 14711444 - 14711385
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  14711444 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 14711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 14779108 - 14779049
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  14779108 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 14779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 19241613 - 19241672
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtcc-ccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||||| ||||||||||| ||||    
T  19241613 caattatactggttccttccacaaaccggaagtagtccagtcctccttgcacttccaagg 19241672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 15522159 - 15522014
Alignment:
Q  21 attatactag-ttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagca 119  Q
    |||||||||| |||||| |||||||  ||||||||| ||| ||||||||||| | |||||| ||||||| || | |  |  |||||||  ||||||| ||    
T  15522159 attatactaggttcctctcacaaactaagagtagtctagtacccttgcacttttgagggattttcactaaaattat--tgaattacaa-atgctcaaaca 15522063  T
Q  120 cacaagcaagagacttatattgctc--tcatacaagaaatagactttta 166  Q
    || |||||||| |||| ||||||||  |||||||||||| | |||||||    
T  15522062 caaaagcaagaaacttttattgctcaatcatacaagaaagaaactttta 15522014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 36210778 - 36210716
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||| |||| | ||||||||||  ||||||||||| ||||||||||||| ||||    
T  36210778 aaacaattatactggttcgttccacaaaccggaagtagtccagtcccccttgcacttccaagg 36210716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 39532370 - 39532265
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaatttgct 113  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||  |||| ||| ||||||| ||||| || | |||||||  ||||    
T  39532370 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttacaaggagattttcactaaaaatcacacagattacaa-atgct 39532272  T
Q  114 caagcac 120  Q
    |||||||    
T  39532271 caagcac 39532265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 17994418 - 17994365
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 72  Q
    |||||||||| |||||| | ||||||||  ||||||||||||||| ||||||||    
T  17994418 caattatactggttccttctacaaaccggaagtagtccagtccccctgcacttc 17994365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 5718945 - 5718893
Alignment:
Q  20 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 72  Q
    ||||||| | |||||||  |||||||||||||||| |||||||||| ||||||    
T  5718945 aattatattggttcctcaaacaaaccgagagtagttcagtcccctttcacttc 5718893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 15366350 - 15366282
Alignment:
Q  23 tatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||| ||||||||| |||| ||  |||||||||||||||||| ||||| |||| ||  ||||||||||    
T  15366350 tataccagttcctcctacaatccaggagtagtccagtccccttccacttataagagagtttcactataa 15366282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 17133350 - 17133390
Alignment:
Q  31 ttcctcccacaaaccgagagtagtccagtccccttgcactt 71  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  17133350 ttcctctcataaaccaagagtagtccagtccccttgcactt 17133390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 33377773 - 33377817
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtcccc 63  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||    
T  33377773 caattatactggttccttccacaaaccggaagtagtccagtcccc 33377817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 22185443 - 22185558
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagc 118  Q
    |||||||||| ||||||  |||||||||||||||||  ||||||||||  |||| ||||||| |||| ||| ||||||| | ||||||||||||||||||    
T  22185443 caattatactggttccttacacaaaccgagagtagtatagtccccttgaccttccaagggatattcattat-aatctcacaaattacaatttgctcaagc 22185541  T
Q  119 acacaagcaagagactt 135  Q
    |||  | ||||||||||    
T  22185542 acatgaacaagagactt 22185558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 26013205 - 26013329
Alignment:
Q  9 agacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaa 107  Q
    ||||||||||||||| ||| | |||||||| |||||||  |||||||||| || ||||||||||  ||||||| |||||||||| ||||||| |||||||    
T  26013205 agacacaaaacaatttatattggttcctcctacaaaccaggagtagtccaatctccttgcactttcaagggat-ttcactataa-tctcatagattacaa 26013302  T
Q  108 tttgctcaagcacacaagcaagagactt 135  Q
     | |||||||||||||| ||||||||||    
T  26013303 at-gctcaagcacacaaacaagagactt 26013329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 17241057 - 17241157
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccc-cttgcacttctaagggatgttcactataa--atctcatatattacaatttgctcaagcacacaagc 126  Q
    |||||||||| ||||||||||||||| |||| | | |||||||| ||||||| ||||||||||  |||||| ||||||||| ||||||||||||||||||    
T  17241057 gttcctcccataaaccgagagtagtctagtctctcatgcacttccaagggat-ttcactataataatctcacatattacaaattgctcaagcacacaagc 17241155  T
Q  127 aa 128  Q
    ||    
T  17241156 aa 17241157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 19903036 - 19903154
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcaca 121  Q
    ||||||||||||||| |||||||||||||||||| ||| |||| ||||||| || |||| |||| |||||| | |  | |||||||  ||||||||||||    
T  19903036 ttatactagttcctctcacaaaccgagagtagtctagt-ccctggcacttcaaaaggattttcaatataaa-cactaagattacaa-atgctcaagcaca 19903132  T
Q  122 caagcaagagacttatattgct 143  Q
    ||||| |||||||| |||||||    
T  19903133 caagcgagagacttctattgct 19903154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 24495248 - 24495190
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||||||  |||||||    
T  24495248 ttatactggttcctcccacaacacaagagtagtccagtccccttgcactttcaagggat 24495190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 9399398 - 9399329
Alignment:
Q  9 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||||||||| ||||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  9399398 agacacaaaacaattatacaagttccttccacaaaccggaagtagtcatgtcccccttgcacttccaagg 9399329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 22747802 - 22747862
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||| ||||||||||    
T  22747802 gttcctcccataacacaagagtagtccagtccccttgcacttccaagggat-ttcactataa 22747862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 20215888 - 20215829
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  20215888 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 20215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23477741 - 23477800
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtccc-cttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  |||||||||||||| |||||||||| ||||    
T  23477741 caattatactggttccttccacaaaccggaagtagtccagtccctcttgcacttccaagg 23477800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23487917 - 23487976
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23487917 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23487976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 40033510 - 40033451
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  40033510 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 40033451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 643483 - 643413
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||||||||||||| ||||||| | ||||||||  |||||||  || ||||||||||||| ||||    
T  643483 aagacacaaaacaattatacaagttccttctacaaaccggaagtagtcatgtcccccttgcacttccaagg 643413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 13546304 - 13546234
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  13546304 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcatgtcccccttgcacttccaagg 13546234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 135602 - 135723
Alignment:
Q  21 attatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcac 120  Q
    |||||||  ||||||| |||||||| ||| |||| || ||||||| |||||| ||||||| |||||||||| ||||| | |||| || ||||||||||||    
T  135602 attataccggttcctctcacaaaccaagaatagttcaatccccttacacttccaagggat-ttcactataa-tctcaaaaattataaattgctcaagcac 135699  T
Q  121 acaagcaagagacttatattgctc 144  Q
    ||||| | ||||||||||||||||    
T  135700 acaaggaggagacttatattgctc 135723  T

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Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 61099 - 61158
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  61099 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 61158  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 19264087 - 19264293
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaa 107  Q
    |||||||| | |||||||| | |||||||||| |||| | |||||||| || ||||||||||||| ||| ||| || | ||| ||||| | | |||||||    
T  19264087 aagacacatagcaattatattggttcctcccataaactgggagtagtctagcccccttgcacttccaagagat-ttaaatat-aatctgaaagattacaa 19264184  T
Q  108 tttgctcaagcacacaagcaagagacttatattgctc--tcatacaagaaatagacttttatcgctcaatcacacagaaaagagacgtctccaatctaac 205  Q
     |||||||| ||||||||||||||||||    |||||   |||||||| || |||||| |||  ||||||||||||  |||||||| ||| |||||||||    
T  19264185 attgctcaatcacacaagcaagagacttcctatgctcaaccatacaag-aagagacttctatttctcaatcacacaagaaagagacttctacaatctaac 19264283  T
Q  206 ttaataaaat 215  Q
    ||||| ||||    
T  19264284 ttaatcaaat 19264293  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 27685507 - 27685604
Alignment:
Q  38 cacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcata-tattacaatttgctcaagcacacaagcaagagactt 135  Q
    ||||||| |||||||||| ||||| ||||||||||||||| || |||||||| |||| || |  |||||||||||||||| |||||||| |||||||||    
T  27685507 cacaaactgagagtagtctagtcctcttgcacttctaaggaattttcactat-aatcacacaggattacaatttgctcaaacacacaagtaagagactt 27685604  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 4500950 - 4501033
Alignment:
Q  9 agacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||||||||||| |||||||||| || ||| |||||| ||||||| |||||||||||||||  ||| ||| ||||||||||    
T  4500950 agacacaaaacaatttatactagttcatctcactaaccgatagtagtctagtccccttgcactttcaagagattttcactataa 4501033  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 19905286 - 19905368
Alignment:
Q  9 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||||||||  |||||||| |||| |   ||||||||||||||||||| ||||||||| ||| |||| |||||    
T  19905286 agacacaaaacaattatacaggttcctcctacaatctatgagtagtccagtccccttgtacttctaagtgattttcattataa 19905368  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 16031953 - 16032021
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaag 76  Q
    |||||| ||| |||||||||  |||||| ||||||||||| |||||||  |||||||||||||||||||    
T  16031953 aagacataaatcaattatacaggttccttccacaaaccgaaagtagtcttgtccccttgcacttctaag 16032021  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 11073852 - 11073912
Alignment:
Q  48 gagtagtccagtccccttgcacttctaagggatgttcactataaatctca-tatattacaatt 109  Q
    ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  11073852 gagtagtccagtccccttgcacttctaagagat-ttcactat-aatctcactatattacaatt 11073912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 13292301 - 13292237
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    ||||||||||||| |||||||  |||| || |||| |||| |||||||||||||||| |||||||    
T  13292301 aaacaattatactggttcctcaaacaatccaagaggagtctagtccccttgcacttccaagggat 13292237  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 14427773 - 14427701
Alignment:
Q  9 agacacaaaacaa-ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    |||||||| |||| ||||||| |||||||| |||||||  |||||||||||||||||||  |||| |||||||    
T  14427773 agacacaagacaacttatactggttcctcctacaaaccatgagtagtccagtccccttgagcttccaagggat 14427701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 47596623 - 47596683
Alignment:
Q  11 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcactt 71  Q
    |||||||||||||||| ||||| |||| ||||| ||||||| || ||||| ||||||||||    
T  47596623 acacaaaacaattatattagtttctcctacaaatcgagagtcgttcagtctccttgcactt 47596683  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 49989628 - 49989688
Alignment:
Q  18 acaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  49989628 acaattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 49989688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 4234846 - 4234922
Alignment:
Q  11 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactat 89  Q
    ||||||| |||||||||||||| |||  ||||||||| |||||| ||| ||||||||||||  || |||| ||||||||    
T  4234846 acacaaatcaattatactagtttctc--acaaaccgaaagtagttcagcccccttgcactttcaatggattttcactat 4234922  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 13147661 - 13147720
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  13147661 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 13147720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 13953631 - 13953690
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  13953631 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 13953690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 15832776 - 15832835
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  15832776 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 15832835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 31114653 - 31114594
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  31114653 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 31114594  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 10917655 - 10917738
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaat 108  Q
    |||||||||||||||||||||  |  |||||||||||| ||||||| |||| ||||||| |||| ||| ||||||| ||||||||||    
T  10917655 ttatactagttcctcccacaacacaggagtagtccagt-cccttgctcttccaagggat-ttcattat-aatctcacatattacaat 10917738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13931353 - 13931423
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagg 77  Q
    ||||||||||||| |||| || |||||| |||||| |||  ||||||||||||||| |||||| |||||||    
T  13931353 aagacacaaaacagttatcctggttccttccacaatccggaagtagtccagtcccctttgcacatctaagg 13931423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 16201889 - 16201833
Alignment:
Q  48 gagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattaca 106  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||    
T  16201889 gagtaatccagtccccttgcacttccaagggat-ttcactataaat-tcataaattaca 16201833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 20724445 - 20724515
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||||||||||||   |||||| ||||||||||  |||||||| || ||||||||||||| ||||    
T  20724445 aagacacaaaacaattatataggttccttccacaaaccggaagtagtcctgtcccccttgcacttccaagg 20724515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 17035195 - 17035123
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagta-gtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||| ||||| ||||||| ||||||| ||||||| ||||| |||||||||||||| ||| ||| ||||||||||    
T  17035195 caataatactggttcctctcacaaactgagagtaagtccaatccccttgcacttcgaagtgat-ttcactataa 17035123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 17239724 - 17239643
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagggatgttcacta 88  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||  |||||| ||||||||| |||| | ||||||||    
T  17239724 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcttgtcccccttgcacttccaaggaaagttcacta 17239643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 13362906 - 13362970
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    ||||||||||||| |||||||  |||| || |||  |||| |||||||||||||||| |||||||    
T  13362906 aaacaattatactggttcctcatacaatccaagacgagtctagtccccttgcacttccaagggat 13362970  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 21721705 - 21721631
Alignment:
Q  11 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttca 85  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||| |||| ||||||||| ||||||| ||||    
T  21721705 acacaaaacaattatactagtttctcccacaaaccaagagtaatccaatcccattgcacttccaagggattttca 21721631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 16422789 - 16422887
Alignment:
Q  31 ttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaaga 130  Q
    |||||||||||||||| |||| |||| |||||||| |||||| || | || ||||||| || ||||| |||||||||||||||||| |||||||| ||||    
T  16422789 ttcctcccacaaaccgggagttgtcccgtccccttacacttccaaagtattttcactacaa-tctcacatattacaatttgctcaaacacacaagtaaga 16422887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 30497418 - 30497500
Alignment:
Q  9 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||| ||| |||||||||| |||||||  |||||||||||||||| ||||| |||| |||||| ||| ||| ||||||||||    
T  30497418 agacataaatcaattatactggttcctcttacaaaccgagagtagttcagtctcctttcacttccaagagattttcactataa 30497500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 9558830 - 9558749
Alignment:
Q  51 tagtccagtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaagagactt 135  Q
    ||||||||| ||||||||||| ||||| || |||||||||| ||||||||  ||||| ||||||||||||||||| | |||||||    
T  9558830 tagtccagttcccttgcacttttaaggaattttcactataa-tctcatat--tacaaattgctcaagcacacaagtacgagactt 9558749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 12397193 - 12397266
Alignment:
Q  2 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    |||||| ||||||||| |||| ||||| |||||||| ||||     ||||||||||||||||||||||||| |||||||    
T  12397193 agagagcagacacaaatcaatcatactggttcctcctacaa-----gagtagtccagtccccttgcacttccaagggat 12397266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 12669883 - 12669815
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||| |||||||||||||  | | |||||||||||||||||||||||| |||| || ||||||||||    
T  12669883 ttatactggttcctcccacaacacaatagtagtccagtccccttgcacttccaaggaat-ttcactataa 12669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 14969260 - 14969203
Alignment:
Q  15 aaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 72  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||| |||||| |||||    
T  14969260 aaaacaattatactggttcgtcccacaaactgagactagtccagttcccttggacttc 14969203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 19019913 - 19019845
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||| |||||||||||||  |  |||||||||||||||||||||||| ||||| || ||||||||||    
T  19019913 ttatactggttcctcccacaatacatgagtagtccagtccccttgcacttttaaggaat-ttcactataa 19019845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 28493004 - 28492935
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    |||||||||| |||||||||  |||||| ||||||||||  ||||||||  |||||||||||||| ||||    
T  28493004 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcctatccccttgcacttccaagg 28492935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 19965911 - 19965857
Alignment:
Q  21 attatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaag 76  Q
    |||||||| |||| || ||||||||||||||||| ||||||| |||||||||||||    
T  19965911 attatactggttc-tctcacaaaccgagagtagttcagtcccgttgcacttctaag 19965857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 21541172 - 21541231
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  21541172 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 21541231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 22018699 - 22018758
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  22018699 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 22018758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23926430 - 23926489
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23926430 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26548970 - 26548911
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  26548970 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 26548911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 2834014 - 2834052
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccg 46  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  2834014 aagacacaaaacaattatacaagttccttccacaaaccg 2834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 12283779 - 12283849
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||||| ||||||||||  |||||||  || ||||||||||||| ||||    
T  12283779 aagacacaaaacaattatacaggttccttccacaaaccggaagtagtcatgtcccccttgcacttccaagg 12283849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 18311677 - 18311587
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 107  Q
    ||||||| ||| ||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  |||| || |||||||||    
T  18311677 caattatcctaattccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatcacacatattacaa 18311587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 22642231 - 22642285
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttc 72  Q
    |||||||||| |||||| ||||||||||  ||||||||||| |||||||||||||    
T  22642231 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttc 22642285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 31587544 - 31587494
Alignment:
Q  21 attatactagttcctcccacaaaccgagagtagtccagtccccttgcactt 71  Q
    ||||||||||||||||| ||||| | ||||||||||| || ||||||||||    
T  31587544 attatactagttcctcctacaaatcaagagtagtccaatctccttgcactt 31587494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 45071309 - 45071247
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  45071309 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 45071247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 12439988 - 12439920
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||||||||||  |  ||||| |||| ||| |||||||||| ||||||| ||||||||||    
T  12439988 ttatactagttcctcccacaattcaggagtactccaatcctcttgcacttccaagggat-ttcactataa 12439920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 25517021 - 25517074
Alignment:
Q  38 cacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||||||||||| |||| |||||||||| ||| ||| ||| ||||||||||    
T  25517021 cacaaaccgagagtactccaatccccttgcatttcgaagagattttcactataa 25517074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 31910706 - 31910754
Alignment:
Q  20 aattatactagttcctcccacaaaccgagagtagtccagtccccttgca 68  Q
    |||||||| |||||||||||||   | ||||||||||||||||||||||    
T  31910706 aattataccagttcctcccacattacaagagtagtccagtccccttgca 31910754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 34659352 - 34659420
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||| |||||||||||||  | |||||||||||||||||||| ||||||||||||| ||||||||||    
T  34659352 ttatactggttcctcccacaacacaagagtagtccagtccccttgtacttctaagggat-ttcactataa 34659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 15478536 - 15478452
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg-gatgttcactataa 91  Q
    ||||||||||||||||||  | |||||| |||||| |||  |||||||||||||||||||||||| |||| ||| ||||||||||    
T  15478536 aagacacaaaacaattatcttggttccttccacaatccggaagtagtccagtccccttgcacttccaaggagattttcactataa 15478452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 20396309 - 20396367
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    |||||||||||||||| ||||| || |||||||||||| |||||||||||| |||||||    
T  20396309 ttatactagttcctcctacaaaacgggagtagtccagtacccttgcacttccaagggat 20396367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 30702008 - 30701958
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttc 72  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||||||||    
T  30702008 ttatactggttcctcccacaaaccgagagtatttcaatccccttgcacttc 30701958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 20395977 - 20396050
Alignment:
Q  8 aagacacaaaaca-attatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    |||| |||||||| || |||||||||||||| | ||| |||||| |||| |||||||||||||||| |||||||    
T  20395977 aagaaacaaaacatatcatactagttcctcctagaaaacgagaggagtcgagtccccttgcacttccaagggat 20396050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 19470025 - 19470109
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagggatgttcactataa 91  Q
    ||||||||||| |||||||| ||||||| ||||||||||  |||||||  || ||||| ||||||||||||   |||||||||||    
T  19470025 aagacacaaaaaaattatacaagttccttccacaaaccggaagtagtcatgtccccctagcacttctaaggagagttcactataa 19470109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 7586936 - 7586877
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  7586936 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 7586877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 11704714 - 11704777
Alignment:
Q  3 gagagaagacacaaaacaa-ttatactagttcctcccacaaaccgagagtagtccagtcccctt 65  Q
    ||||||||||||||||||| ||||||  |||||||| ||||| |  ||||||||||||||||||    
T  11704714 gagagaagacacaaaacaatttatacccgttcctcctacaaatcaggagtagtccagtcccctt 11704777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 15586078 - 15586149
Alignment:
Q  20 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||| ||||||||||||||| || |||||||||||   ||||| ||| || |||| ||||||||||    
T  15586078 aattatactaattcctcccacaaaccaagtgtagtccagtcttgttgcatttcaaaaggattttcactataa 15586149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 17609086 - 17609027
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  |||||||||||| |||||||||||| ||||    
T  17609086 caattatactggttccttccacaaaccggaagtagtccagtctcccttgcacttccaagg 17609027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 20395674 - 20395729
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    ||||||| |||||||| | ||| || ||||||||||||||||||||||||| ||||    
T  20395674 ttatactggttcctcctagaaaacgggagtagtccagtccccttgcacttccaagg 20395729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 20635090 - 20635149
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  20635090 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 20635149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 21127600 - 21127659
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  21127600 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 21127659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 12953778 - 12953716
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  12953778 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 12953716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 20395319 - 20395377
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    ||||||| ||| |||| | ||| || |||||||||||||| ||||||||||||||||||    
T  20395319 ttatactggtttctcctagaaaacgggagtagtccagtcctcttgcacttctaagggat 20395377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 1830132 - 1830091
Alignment:
Q  9 agacacaaaacaattatactagttcctcccacaaaccgagag 50  Q
    ||||||||| |||||||| | |||||||||||||||||||||    
T  1830132 agacacaaatcaattatattggttcctcccacaaaccgagag 1830091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 17742375 - 17742322
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcactt 71  Q
    ||||||| ||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  17742375 caattatcctagttccttccacaaaccggaagtagtccagtcccccttgcactt 17742322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 12347459 - 12347531
Alignment:
Q  17 aacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagggatgttcacta 88  Q
    |||||||||||  |||||| ||||||||||  |||||||| |||||| ||||||||| |||| | ||||||||    
T  12347459 aacaattatacaggttccttccacaaaccggaagtagtcctgtccccattgcacttccaaggaaagttcacta 12347531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 24729310 - 24729246
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcactt 71  Q
    |||||||||||||||||||| ||||||| |||||| |||  |||||||  || ||||||||||||    
T  24729310 aagacacaaaacaattatacaagttccttccacaatccggaagtagtcttgtcccccttgcactt 24729246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 18565355 - 18565467
Alignment:
Q  22 ttatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataaatctc-atatattacaatttgctcaagcac 120  Q
    |||||||||||||||||||||  | |||||||||||||||||||||| ||| || |||| |||||||| |||| | ||  ||||||| ||||||||| ||    
T  18565355 ttatactagttcctcccacaacacaagagtagtccagtccccttgcatttccaatggat-ttcactat-aatcactatggattacaacttgctcaaggac 18565452  T
Q  121 acaagcaagagactt 135  Q
    || | ||||||||||    
T  18565453 actaccaagagactt 18565467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 40002584 - 40002646
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  40002584 aaacaattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttctaagg 40002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 30213742 - 30213802
Alignment:
Q  20 aattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggat 80  Q
    ||||||||  ||||||| |||||  |||||||||||||||||||||||||||| |||||||    
T  30213742 aattatacatgttcctctcacaattcgagagtagtccagtccccttgcacttccaagggat 30213802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 19942586 - 19942656
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||||||  |||||| ||||||||||| |||||||| || ||||||||||||| ||||    
T  19942586 aagacacaaagcaattatacaggttccttccacaaaccgaaagtagtcctgtcccccttgcacttccaagg 19942656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 23271879 - 23271817
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||| |||||||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23271879 aaacaattaaactagttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20311184 - 20311255
Alignment:
Q  1 tagagagaagacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcactt 71  Q
    |||| |||||||||| ||||||| ||||||||||| |  ||||| ||||||||||  |||||||||||||||    
T  20311184 tagatagaagacacataacaatttatactagttccccttacaaatcgagagtagtatagtccccttgcactt 20311255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21104821 - 21104892
Alignment:
Q  1 tagagagaagacacaaaacaatt-atactagttcctcccacaaaccgagagtagtccagtccccttgcactt 71  Q
    |||| |||||||||| ||||||| ||||||||||| |  ||||| ||||||||||  |||||||||||||||    
T  21104821 tagatagaagacacataacaatttatactagttccccttacaaatcgagagtagtatagtccccttgcactt 21104892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23363715 - 23363774
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||| ||||||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  23363715 caattatcctagttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 23363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 29378968 - 29379027
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  29378968 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 29379027  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 20049812 - 20049770
Alignment:
Q  99 atattacaatttgctcaagcacacaagcaagagacttatattg 141  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  20049812 atattacaatttgctcaaacacacaagtaagagacttacattg 20049770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 20084808 - 20084884
Alignment:
Q  57 agtccccttgcacttctaagggatgttcactataaatctcatatattacaatttgctcaagcacacaagcaagagactt 135  Q
    ||||||||||||| |||||| ||  || ||||||| ||||| ||||||||||| | |||| ||||||||||||||||||    
T  20084808 agtccccttgcacatctaagagagttttactataa-tctcaaatattacaatt-gttcaatcacacaagcaagagactt 20084884  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 13644640 - 13644723
Alignment:
Q  9 agacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||| |||||||||  ||||| |||||||||||||  |  |||||||||||||| |||||||||  ||||||| ||||||||||    
T  13644640 agacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggat-ttcactataa 13644723  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 13745065 - 13745148
Alignment:
Q  9 agacacaaaacaatt--atactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||| |||||||||  ||||| |||||||||||||  |  |||||||||||||| |||||||||  ||||||| ||||||||||    
T  13745065 agacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggat-ttcactataa 13745148  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 22212061 - 22212012
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtcccctt 65  Q
    |||||||||| || |||||| ||||||||||  |||||||||||||||||    
T  22212061 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccctt 22212012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 23433691 - 23433631
Alignment:
Q  30 gttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||||||||||  |  |||||||||||| |||||||||||| ||||||| ||||||||||    
T  23433691 gttcctcccacaacacaggagtagtccagttcccttgcacttccaagggat-ttcactataa 23433631  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 18557402 - 18557470
Alignment:
Q  9 agacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    ||||||||| |||||||| | ||| || |||||| |||  ||||||||| |||||||||||||| ||||    
T  18557402 agacacaaagcaattatagtggtttcttccacaatccggaagtagtccactccccttgcacttccaagg 18557470  T

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Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16058 - 16147
Alignment:
Q  2 agagagaagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    |||||| |||||||||  ||||||||  ||| |||| |||| || ||||||||| || ||||||||||||| ||| ||| ||||||||||    
T  16058 agagagcagacacaaagtaattatacaggtttctcctacaatccaagagtagtcaagcccccttgcacttcaaagtgattttcactataa 16147  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 7284 - 7353
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    |||||||| | |||||||||  |||||| ||||||||||| ||||||||  |||||||||||||| ||||    
T  7284 aagacacatagcaattatacaggttccttccacaaaccgaaagtagtcctatccccttgcacttccaagg 7353  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 382158 - 382241
Alignment:
Q  9 agacacaaaacaat--tatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||||||||||||  ||||||||||||| ||||||  |  |||||||||| |||||||||| ||||||| ||| ||||||||||    
T  382158 agacacaaaacaatcatatactagttccttccacaacacaggagtagtccactccccttgcagttctaagagat-ttcactataa 382241  T

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Target: scaffold0177 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 21117 - 21057
Alignment:
Q  18 acaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    ||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  21117 acaattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 21057  T

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Target: scaffold1507 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1507
Description:

Target: scaffold1507; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 91 - 32
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  91 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 32  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 5771 - 5830
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  5771 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 5830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 4485 - 4544
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  4485 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 4544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 1714 - 1655
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  1714 caattatactggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 1655  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 34986 - 35045
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccag-tccccttgcacttctaagg 77  Q
    |||||||||| |||||| ||||||||||| |||||||||| | |||||||||||| ||||    
T  34986 caattatactggttccttccacaaaccgaaagtagtccagtttcccttgcacttccaagg 35045  T

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Target: scaffold1747 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1747
Description:

Target: scaffold1747; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 680 - 750
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtcc-agtccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||| | ||||||||||| |||||||| |  ||||||||||||| ||||    
T  680 aagacacaaaacaattatacaggttctttccacaaaccgaaagtagtcctatcccccttgcacttccaagg 750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1745 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1745
Description:

Target: scaffold1745; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 731 - 661
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtcc-agtccccttgcacttctaagg 77  Q
    ||||||||||||||||||||  |||| | ||||||||||| |||||||| |  ||||||||||||| ||||    
T  731 aagacacaaaacaattatacaggttctttccacaaaccgaaagtagtcctatcccccttgcacttccaagg 661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 1204 - 1270
Alignment:
Q  11 acacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    ||||||| ||||||||| ||||||| ||||||||||  |||||||   |||||||||||||| ||||    
T  1204 acacaaagcaattatacaagttccttccacaaaccggaagtagtcatatccccttgcacttccaagg 1270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 2418 - 2356
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 77  Q
    ||||||||||||| |||||| ||||||| ||  |||||||||||| |||||||||||| ||||    
T  2418 aaacaattatactggttccttccacaaatcggaagtagtccagtctcccttgcacttccaagg 2356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 10467 - 10405
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg 77  Q
    |||||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| ||||    
T  10467 aaacaattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaagg 10405  T

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Target: scaffold0497 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 10987 - 10897
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 107  Q
    ||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| |||||||  ||||||| | |||||||    
T  10987 caattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaataatctcaaagattacaa 10897  T

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Target: scaffold0163 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 25818 - 25888
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagt-agtccagtccccttgcacttctaagg 77  Q
    |||||||||| |||||||||  |||||| ||||||||||  ||| ||||| ||||||||||||||| ||||    
T  25818 aagacacaaagcaattatacaggttccttccacaaaccggaagtcagtcctgtccccttgcacttccaagg 25888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 59602 - 59540
Alignment:
Q  16 aaacaattatactagttcctcccacaaaccgagagtagtccagtc-cccttgcacttctaagg 77  Q
    ||||||||||||| |||||| |||||||||   |||||||||||| |||||||||||| ||||    
T  59602 aaacaattatactggttccttccacaaaccagaagtagtccagtctcccttgcacttccaagg 59540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 174937 - 175027
Alignment:
Q  19 caattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttctaagg-gatgttcactataaatctcatatattacaa 107  Q
    ||||||| || |||||| ||||||||||  ||||||||||| ||||||||||||| |||| ||| ||||||| ||||| || | |||||||    
T  174937 caattatcctggttccttccacaaaccggaagtagtccagtcccccttgcacttccaaggagattttcactaaaaatcacacagattacaa 175027  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 268145 - 268211
Alignment:
Q  12 cacaaaacaattatactagttcctcccacaaaccgagagtagtcc-agtccccttgcacttctaagg 77  Q
    ||||||||||||||||  |||||| ||||||||||  |||||||| | |||||||||||||| ||||    
T  268145 cacaaaacaattatacaggttccttccacaaaccggaagtagtcctattccccttgcacttccaagg 268211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 2768 - 2699
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagg 77  Q
    |||||||||| ||||||||   |||||| ||||||||||  |||||||| || |||||||||||| ||||    
T  2768 aagacacaaagcaattatataggttccttccacaaaccggaagtagtcctgtgcccttgcacttccaagg 2699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 14476 - 14557
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagtcccc-ttgcacttctaagggatgttcacta 88  Q
    |||||||||| |||||||||  |||||| ||||||||||  |||||||  |||||| ||||||||| |||| | ||||||||    
T  14476 aagacacaaagcaattatacaggttccttccacaaaccggaagtagtcttgtcccccttgcacttccaaggaaagttcacta 14557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 20222 - 20157
Alignment:
Q  8 aagacacaaaacaattatactagttcctcccacaaaccgagagtagtccagt-ccccttgcacttc 72  Q
    |||| |||||||||||||||  |||||| ||||||||||  |||||||| || |||||||||||||    
T  20222 aagatacaaaacaattatacaggttccttccacaaaccggaagtagtcctgtcccccttgcacttc 20157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 1122 - 1054
Alignment:
Q  23 tatactagttcctcccacaaaccgagagtagtccagtccccttgcacttctaagggatgttcactataa 91  Q
    ||||| ||||||||| |||| ||  |||||||||||||||||| ||||| |||| ||  ||||||||||    
T  1122 tataccagttcctcctacaatccaggagtagtccagtccccttccacttataagagagtttcactataa 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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