View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_13 (Length: 290)
Name: NF9702_low_13
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 4928114 - 4927857
Alignment:
| Q |
19 |
gattccatatcctttgaacctaagtgatcatggagagtgccattgaccatttcatcatttttatacacgagaatttcctcannnnnnnggtcacaaaatc |
118 |
Q |
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| T |
4928114 |
gattccatatccctcgaacctaagtgatcttggagagtgccattgaccatttcatcttttttatacacgagaattttcttatttttttggtcacaaaatc |
4928015 |
T |
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| Q |
119 |
ctatcaaagatatcaaatttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttatccgcaacaatgc |
218 |
Q |
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| T |
4928014 |
ctataaaagatatcaaatttgggtgacaaagctggcagaggtgttctatttcattcttgaaaccttgtcccctaaatacatctgttatccgcaacaatgc |
4927915 |
T |
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| Q |
219 |
tattggataatcattttcaccattatatttgacatagcctttgtagactatatcgccc |
276 |
Q |
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| T |
4927914 |
tattggataatcattttcaccattatatttgacatagcctttgtagactatatcgccc |
4927857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 4921859 - 4921620
Alignment:
| Q |
32 |
ttgaacctaagtgatcatggagagtgccattgaccatttcatcatttttatacacgagaatttcctcannnnnnnggtcacaaaatcctatcaaagatat |
131 |
Q |
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| T |
4921859 |
ttgaacataagtgatcacggagagagccattgaccatttcatcttttttatacacgagaattttctcatttttttggtcacaaaatcctatcaaagatat |
4921760 |
T |
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| Q |
132 |
caaatttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttatccgcaacaatgctattggataatca |
231 |
Q |
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| T |
4921759 |
caaatttggatgacaaatctggcagtggagttcaatttcattcttgaacgtttctttcatgtatgtatcttttatccgcaacaatgctattggataatca |
4921660 |
T |
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| Q |
232 |
ttttcaccattatatttgacatagcctttgtagactatat |
271 |
Q |
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| T |
4921659 |
ttttcaccattatatttgacatagcctttgtagactatat |
4921620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 4908184 - 4908340
Alignment:
| Q |
107 |
ggtcacaaaatcctatcaaagatatcaaatttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttat |
206 |
Q |
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||||||| |||||||| ||||| ||||||||||||||| ||||||||| | |||||||||||| |||||||| | || ||| | ||| ||| | | || |
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| T |
4908184 |
ggtcacagaatcctataaaagacgtcaaatttgggtgatgaagctggcagttgagttcaatttccttcttgaacttccattcattaaatatatgtatcat |
4908283 |
T |
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| Q |
207 |
ccgcaacaatgctattggataatcattttcaccattatatttgacatagcctttgta |
263 |
Q |
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| T |
4908284 |
ccgtttcactgctattggataatcagtttcaccattatgtttgagataacctttgta |
4908340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 4904268 - 4904423
Alignment:
| Q |
115 |
aatcctatcaaagatatcaaatttgggtgataaagctggcaatggagttcaatttcattcttgaaatgccgttccatgaatgtatttgttatccgcaaca |
214 |
Q |
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|||||||| |||||||||||||| ||||||| ||| |||| |||||||||||| | |||||||| || || ||| || ||| |||| | || |
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| T |
4904268 |
aatcctattaaagatatcaaattagggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgcccaatctaagtgtcatcctctcca |
4904367 |
T |
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| Q |
215 |
atgctattggataatcattttcaccattatatttgacatagcctttgtagactata |
270 |
Q |
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| T |
4904368 |
atgctactggatactcattttcaccattatgtttgagataacctttgtacactata |
4904423 |
T |
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