View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_15 (Length: 249)
Name: NF9702_low_15
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_15 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 23171321 - 23171554
Alignment:
| Q |
15 |
tggacatctacggatccaaaatggacggtccaaatccctttgtgcggccttggttgagtgtatttagggtgagtctataaaatgatatgtgtgttggctg |
114 |
Q |
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| T |
23171321 |
tggacatctgcggatccgaaatgaacggtccaaatacctttgtgcggccttggttgagtgtatttagggtgagtctatacaatgat--gtgtattggctg |
23171418 |
T |
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| Q |
115 |
ctagtgagt--tgagaggacccgattttttaaggaattgatcaatatgaatatatattttgttccagataattattgtgaaagttaggagaaatgtgagg |
212 |
Q |
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| T |
23171419 |
ctagtgagagctgagaggacca-atttttcaaggaattgatcaatatgaatatataatttgttccagataattattgtgaaagttaggagaaatatgagg |
23171517 |
T |
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| Q |
213 |
tacagactaggtgtaggggatgttatcgagtatattt |
249 |
Q |
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| T |
23171518 |
tacagactgggtgtaagggatgttatcgagtatattt |
23171554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 23185943 - 23186054
Alignment:
| Q |
138 |
tttttaaggaattgatcaatatgaatatatattttgttccagataattattgtgaaagttaggagaaatgtgaggtacagactaggtgtaggggatgtta |
237 |
Q |
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| T |
23185943 |
ttttgaaggaattgatcaatatgaatatataatttgttccagataattattgtgaaagttaggagaaatatgaggtacagactaggtgtaggggatgtta |
23186042 |
T |
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| Q |
238 |
tcgagtatattt |
249 |
Q |
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| T |
23186043 |
tcgagcatattt |
23186054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 23176091 - 23176180
Alignment:
| Q |
162 |
atatatattttgttccagataattattgtgaaagttaggagaaatgtgaggtaca--gactaggtgtaggggatgttatcgagtatattt |
249 |
Q |
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| T |
23176091 |
atatattttttgctccagataattatcgtaaaagttaggagaaatatgagttacatggaccaggtgtaggtgatgttatcaagtatattt |
23176180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 23176002 - 23176051
Alignment:
| Q |
114 |
gctagtgagttgagaggacccgattttttaaggaattgatcaatatgaat |
163 |
Q |
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| T |
23176002 |
gctagtgacttgagatgacccgatttaataaggaattgatcaatatgaat |
23176051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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