View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_17 (Length: 227)
Name: NF9702_low_17
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33893609 - 33893400
Alignment:
| Q |
1 |
atagttgtataaatatcatttcttccaaaagtaatgtataccgtttgaaattttgaaatagaatttagagtcggaaaggtcaatgcatattttgacaaat |
100 |
Q |
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| T |
33893609 |
atagttatacaaatattatttcttccaaaagtaatgtataccgtttgaaattttgaaatagaatttagaggcggaaaggtcaatgcatattttgacaaac |
33893510 |
T |
|
| Q |
101 |
acattcataaccatattgacgtgcatgcaaaccataccacggacactttctacataacagtgagcataaaataaaatattttcatcagaaaatattttga |
200 |
Q |
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| T |
33893509 |
acattcataaccatattgacgtgcatgcaaaccataccacggacactttctacataacactgagcataaaataaaatattttcatcagaaaatattttga |
33893410 |
T |
|
| Q |
201 |
aattaaacat |
210 |
Q |
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|||||||||| |
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| T |
33893409 |
aattaaacat |
33893400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 33850779 - 33850843
Alignment:
| Q |
143 |
acactttctacataacagtgagcataaaataaaatattttcatcagaaaatattttgaaattaaacat |
210 |
Q |
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| T |
33850779 |
acactttatacataacagtgagcataaaacaaagt---ttcatcagaaaatattttgaaattaaacat |
33850843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 33755271 - 33755336
Alignment:
| Q |
143 |
acactttctacataacagtgagca-taaaataaaatattttcatcagaaaatattttgaaattaaacat |
210 |
Q |
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||||||| |||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
33755271 |
acactttatacataacagtgagcaataaaacaaagt---ttcatcagaaaatattttgaaattaaacat |
33755336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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