View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_2 (Length: 589)
Name: NF9702_low_2
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 15 - 575
Target Start/End: Original strand, 44714466 - 44715026
Alignment:
| Q |
15 |
ggagcagagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtg |
114 |
Q |
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| T |
44714466 |
ggagcagagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtg |
44714565 |
T |
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| Q |
115 |
tcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaac |
214 |
Q |
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| T |
44714566 |
tcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggactggaactgacaccactgtgggtgcactagataattcgtgaac |
44714665 |
T |
|
| Q |
215 |
aaaatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcatt |
314 |
Q |
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| T |
44714666 |
aaaatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcatt |
44714765 |
T |
|
| Q |
315 |
gccatatttgtcatggccaagttttttaggtactcttgtgggtaccatgtcactggtagcttgcctcctgatagtaaaacacaatagtgtaataattgta |
414 |
Q |
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| T |
44714766 |
gccatatttgtcatggccaagttttttaggtactcttgtgggtaccatgtcactggtagcttgcctcctgatagtaaaacacaatagtgtaataattgta |
44714865 |
T |
|
| Q |
415 |
ttagtttataggctatttgcaattgggaattcattcaattttttcaagttttatgacaaacctgggctagcagttccaaataaaatgtcagcaattgcag |
514 |
Q |
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| T |
44714866 |
ttagtttataggctatttgcaattgggaattcattcaattttttcaagttttatgacaaacctgggctagcagttccaaataaaatgtcagcaattgcag |
44714965 |
T |
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| Q |
515 |
caccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtcattctt |
575 |
Q |
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| T |
44714966 |
caccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtcattctt |
44715026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 385
Target Start/End: Complemental strand, 39091296 - 39090935
Alignment:
| Q |
21 |
gagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtgtcactc |
120 |
Q |
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| T |
39091296 |
gagaacaccaacaaagtgttagtaccatcttttgaaccaacgtttttaacatcaatgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactc |
39091197 |
T |
|
| Q |
121 |
taattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaacaaaatg |
220 |
Q |
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| T |
39091196 |
taattgct--gctt----tgtttgagctgtttccacggcggtgtccgtctactggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtt |
39091103 |
T |
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| Q |
221 |
tgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctat---tttgcttggtctcattgcc |
317 |
Q |
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| T |
39091102 |
tgtgtaagataatccgtaaccaaatggatataccacagggccgttgtaaaaacgataggttctcccagggtaccctgtggatgagcttggtctcattgcc |
39091003 |
T |
|
| Q |
318 |
atatttgtcatggccaagttttttaggtactcttgtgggtaccatgtcactggtagcttgcctcctga |
385 |
Q |
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| T |
39091002 |
atatttgtcattgccaagtttttgaggtaaccttgtgggtaccatgtcataggtagcttagctcctga |
39090935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 554
Target Start/End: Complemental strand, 39090498 - 39090414
Alignment:
| Q |
470 |
acaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgcc |
554 |
Q |
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||||||||||| ||| |||||||| || || || ||||| ||||||||||| ||||| || |||||||| |||||||| ||||| |
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| T |
39090498 |
acaaacctgggttagtggttccaaacaatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaaaatgcc |
39090414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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