View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_3 (Length: 481)
Name: NF9702_low_3
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 37162166 - 37162619
Alignment:
| Q |
18 |
agaaacagtaccatttggtccttgccatggcataaacccatctggctgaatcaaatctccaatgtaagtttttatgaaaacagtccttgagaaattcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37162166 |
agaaacagtaccatttggtccttgccatggcataaacccatctggctgaatcaaatctccaatgtaagttttcatgaaaacagtccttgagaaattcttc |
37162265 |
T |
|
| Q |
118 |
cacggacgcgcaagataggctttgttgtcgaatttcacattgtgagtatcggccacaatgtggcaattttgaatgactattcctgatggttgatgtctct |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162266 |
catggacgcgcaagataggctttgttgtcgaatttcacattgtgagtatcggccacaatgtggcaattttgaatgactattcctgatggttgatgtctct |
37162365 |
T |
|
| Q |
218 |
cttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162366 |
cttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaagat |
37162465 |
T |
|
| Q |
318 |
gaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162466 |
gaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaag |
37162565 |
T |
|
| Q |
418 |
attgccttgtctgcttggacccttatcgctactgcttgatgtttttgatgtcca |
471 |
Q |
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| T |
37162566 |
attgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtcca |
37162619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 464
Target Start/End: Complemental strand, 37150692 - 37150509
Alignment:
| Q |
281 |
tgcagttttggaaaacagatattgcatcgccaaagatgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataa |
380 |
Q |
| |
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||||||||||||| || ||| ||||| |||||||| ||||| ||||| |||||||| || || ||||| || ||||||||||||| ||||||||| | |
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| T |
37150692 |
tgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaag |
37150593 |
T |
|
| Q |
381 |
tgtgtcttgatatccgtccattgaacatttgtaaaagattgccttgtctgcttggacccttatcgctactgcttgatgtttttg |
464 |
Q |
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| T |
37150592 |
tgtgtcttgatatccatccattgagcaattgtagaagatagccttatctccttgaactcttagtgccactgcttgatgtttttg |
37150509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 217 - 464
Target Start/End: Original strand, 37154621 - 37154868
Alignment:
| Q |
217 |
tcttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaaga |
316 |
Q |
| |
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|||||||| |||||||| || |||||||||||||||||| | || ||| || | |||| ||||||||||||| || ||| ||||| ||||||| |
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| T |
37154621 |
tcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttcggaccacgaatttgcagttttggaataccgattctgcattaccaaaga |
37154720 |
T |
|
| Q |
317 |
tgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaa |
416 |
Q |
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||||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | || |
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| T |
37154721 |
caaagtcgatggtacctgaaatagtacagtcacggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaa |
37154820 |
T |
|
| Q |
417 |
gattgccttgtctgcttggacccttatcgctactgcttgatgtttttg |
464 |
Q |
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||| | ||| ||| |||| || |||| || ||||||||||||||||| |
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| T |
37154821 |
gatagtcttatctccttgaactcttagtgccactgcttgatgtttttg |
37154868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 464
Target Start/End: Complemental strand, 37159517 - 37159334
Alignment:
| Q |
281 |
tgcagttttggaaaacagatattgcatcgccaaagatgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataa |
380 |
Q |
| |
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||||||||||||| || ||| ||||| |||||||| ||||| ||||| |||||||| || || ||||| || ||||||||||||| ||||||||| | |
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| T |
37159517 |
tgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaag |
37159418 |
T |
|
| Q |
381 |
tgtgtcttgatatccgtccattgaacatttgtaaaagattgccttgtctgcttggacccttatcgctactgcttgatgtttttg |
464 |
Q |
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| T |
37159417 |
tgtgtcttgatatccatccattgagcaattgtagaagatagccttatctccttgaactcttagtgccactgcttgatgtttttg |
37159334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 217 - 464
Target Start/End: Original strand, 91713 - 91960
Alignment:
| Q |
217 |
tcttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaaga |
316 |
Q |
| |
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|||||||| |||||||| || |||||||||||||||||| | || ||| || | |||| ||||||||||||| || ||| ||||| ||||||| |
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| T |
91713 |
tcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttcggaccacgaatttgcagttttggaataccgattctgcattaccaaaga |
91812 |
T |
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| Q |
317 |
tgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaa |
416 |
Q |
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||||| ||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | || |
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| T |
91813 |
caaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaa |
91912 |
T |
|
| Q |
417 |
gattgccttgtctgcttggacccttatcgctactgcttgatgtttttg |
464 |
Q |
| |
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||| ||||| ||| |||| || |||| || ||||||||||||||||| |
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| T |
91913 |
gatagccttatctccttgaactcttagtgccactgcttgatgtttttg |
91960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 217 - 464
Target Start/End: Original strand, 95020 - 95267
Alignment:
| Q |
217 |
tcttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaaga |
316 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||| | || ||| || | |||| |||||||||| || || ||| ||||| ||||||| |
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| T |
95020 |
tcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttcggaccacgaatttgcagttttgaaataccgattctgcattaccaaaga |
95119 |
T |
|
| Q |
317 |
tgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaa |
416 |
Q |
| |
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||||| ||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | || |
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| T |
95120 |
caaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaa |
95219 |
T |
|
| Q |
417 |
gattgccttgtctgcttggacccttatcgctactgcttgatgtttttg |
464 |
Q |
| |
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||| ||||| ||| |||| || |||| || ||||||||||||||||| |
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| T |
95220 |
gatagccttatctccttgaactcttagtgccactgcttgatgtttttg |
95267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 46315939 - 46315741
Alignment:
| Q |
223 |
ctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaagatgaagt |
322 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||| ||| || | || ||||| ||||||| ||||| || | ||| ||||||| ||||| |
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| T |
46315939 |
ctaccttgtgcagtcacaatgcattgttggttttccaatggctttcggacgacaaaagtgcaattttggagaacagcaatggaatcaccaaagacgaagt |
46315840 |
T |
|
| Q |
323 |
caatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattg |
421 |
Q |
| |
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||||||| ||||| || |||||||||| || ||||||||||||||||| | || | ||||||||| || || |||||| ||||||||||| |||| |
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| T |
46315839 |
caatggtacctgagataatacaatcacggtagaattgacgcatggtgtgagcgtaaagtgtgtcttggtaaccatccattctgcatttgtaaaaaattg |
46315741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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