View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9702_low_4 (Length: 431)
Name: NF9702_low_4
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 37153754 - 37154147
Alignment:
| Q |
11 |
cacagataggtaacattctttcacttctttagtttacgcaactgggtttctcttacaacattatatagctatatccaattaaaacctataaattagtttg |
110 |
Q |
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| T |
37153754 |
cacagataggtaacattctttcacttctttagtttacgcaactgggtttctcttacaacattatatagctatatccaattaaaacctataaatta----- |
37153848 |
T |
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| Q |
111 |
ttacattagttttttcttcttcttccatgacctttactaatctaatagtttgcaattttagtcatgttgatttttatgcttttatatacttggaacttat |
210 |
Q |
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| T |
37153849 |
--------gttttttcttcttcttccatgacctttactaatctaatagtttgcaattttagtcatgttgatttttatgcttttatatacttggaacttat |
37153940 |
T |
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| Q |
211 |
gcagattaggagcctgagaacactaaacaattctgagaatttcacaattactgttcagaatacatggcttgtcaaatgggatctatgaatctgccatcga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37153941 |
gcagattaggagcctgagaacactaaacaattctgagaatttcacaattactgttcagaatacatggcttgtcaaatgggatctatgaatctgccgtcga |
37154040 |
T |
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| Q |
311 |
aattatcaattacagagaatgaaggctccaaaagatcatttatccacagctgttgttgtcagccacgttttagtgctttaactccaaatgttggcatgaa |
410 |
Q |
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| T |
37154041 |
aattatcaattacagagaatgaaggctccaaaagatcatttatccacagctgttgttgtcagccacgttttagtgctttaactccaaatgttggcatgaa |
37154140 |
T |
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