View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9702_low_7 (Length: 372)
Name: NF9702_low_7
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 239 - 366
Target Start/End: Original strand, 34685492 - 34685619
Alignment:
| Q |
239 |
cccttctatgtgcaagcgtttcattaaataggaggccacattttccatcaaaataatctgaagaaagaactttgcacttgaaattacatcatcttccatt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34685492 |
cccttctatgtgcaagcgtttcattaaataggaggccacattttccatcaaaataatctgaagaaagaactttgcacttgaaattacatcatcttccatt |
34685591 |
T |
|
| Q |
339 |
acttactactactatatatttcttctct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34685592 |
acttactactactatatatttcttctct |
34685619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 34693299 - 34693372
Alignment:
| Q |
256 |
gtttcattaaataggaggccacattttccatcaaaataatctgaagaaagaactttgcacttgaaattacatca |
329 |
Q |
| |
|
|||| ||||||||||| |||||||||| | |||| |||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
34693299 |
gttttattaaataggatgccacatttttcgtcaagataacctgaagaaagaactttgcaattgaaattacatca |
34693372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 34685281 - 34685383
Alignment:
| Q |
18 |
gtcagttggtagcaacagtgcataatatatgtaaaatctaggttcaaacctccacggctnnnnnnnnntataaaataaccggtgtaagtaaagctggcaa |
117 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||| |||||||||||| ||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
34685281 |
gtcaattggtagcaacaatgcataatatatgcaaaatataggttcaaacc-ccacgactac--------aaaaaataaccggtgtaagtaaagctggcaa |
34685371 |
T |
|
| Q |
118 |
acatggttcttg |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34685372 |
acatggttcttg |
34685383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 34693388 - 34693438
Alignment:
| Q |
315 |
cttgaaattacatcatcttccattacttactactactatatatttcttctc |
365 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34693388 |
cttgcaattacatcatcttccattacttactactattatatatttcttctc |
34693438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 34685432 - 34685467
Alignment:
| Q |
179 |
acttcattgccccggtgtatttcatgcatgcatcca |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34685432 |
acttcattgccacggtgtatttcatgcatgcatcca |
34685467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 44110961 - 44111010
Alignment:
| Q |
19 |
tcagttggtagcaacagtgcataatatatgtaaaatcta-ggttcaaacc |
67 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
44110961 |
tcagttggtaggaacagtgcatagtatatgtaaagtctagggttcaaacc |
44111010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University