View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9702_low_9 (Length: 346)
Name: NF9702_low_9
Description: NF9702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9702_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 41484162 - 41483846
Alignment:
| Q |
18 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484162 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcac |
41484063 |
T |
|
| Q |
118 |
aaaagtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484062 |
aaaagtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaa |
41483963 |
T |
|
| Q |
218 |
atatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483962 |
atatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctg |
41483863 |
T |
|
| Q |
318 |
gctttttcatgatcctt |
334 |
Q |
| |
|
||||||||||||||||| |
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| T |
41483862 |
gctttttcatgatcctt |
41483846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 40751376 - 40751052
Alignment:
| Q |
18 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcac |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
40751376 |
tttttgtgattggtccatttttaaagaagccaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaacagac-tatcag |
40751278 |
T |
|
| Q |
118 |
--aaaagtgtgttcatgagagggttaaaa-------ggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttg |
208 |
Q |
| |
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||||||||||| | ||||||||||||| ||||||||| |||||| ||||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
40751277 |
gaaaaagtgtgtttaagagagggttaaaacttaaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacattacatgttt |
40751178 |
T |
|
| Q |
209 |
cttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagt |
308 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
40751177 |
cttctcaaaatatagcttggttctctcattgtgattatctgcttgacgcttctgtagatccttctcacgggacataagttcattcctccgagcttccagt |
40751078 |
T |
|
| Q |
309 |
tccagcctggctttttcatgatcctt |
334 |
Q |
| |
|
|||||||||| ||||||||||||||| |
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|
| T |
40751077 |
tccagcctggatttttcatgatcctt |
40751052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 41477121 - 41476803
Alignment:
| Q |
18 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttta-gaaattgacctatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| ||||||||| |
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|
| T |
41477121 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagtaatgtgttatatttttaagaaatagacctatca |
41477022 |
T |
|
| Q |
117 |
caaaa-gtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctca |
215 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||| || ||||||| |
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| T |
41477021 |
gaaaaagtgtgttcaagagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctca |
41476922 |
T |
|
| Q |
216 |
aaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcc |
315 |
Q |
| |
|
| |||||||||| | |||||||| |||||||| ||| |||||||||||||||||| |||||||| |||| || |||||||||| |||||||||| ||| |
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|
| T |
41476921 |
agatatagcttgtttctctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcc |
41476822 |
T |
|
| Q |
316 |
tggctttttcatgatcctt |
334 |
Q |
| |
|
| ||| ||||||||||||| |
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|
| T |
41476821 |
tagctatttcatgatcctt |
41476803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 41470105 - 41469791
Alignment:
| Q |
18 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttta-gaaattgacctatca |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| ||||| |||| ||||||||| ||||||||| |||||| ||| | ||||||||| |
|
|
| T |
41470105 |
tttttgtgattggtccacttttaaagaagccgatttagttct---gtaaaatgatgactttcaaa-aaatgtgttgggattttaagaagtagacctatca |
41470010 |
T |
|
| Q |
117 |
caaaa-gtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctca |
215 |
Q |
| |
|
|||| ||||||||| ||||| |||||| |||| ||| | |||||||||||||||| ||||||| |||||| ||| | |||||||| | ||| | |
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| T |
41470009 |
gaaaaagtgtgttcaagagagcattaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggcccgtctga |
41469910 |
T |
|
| Q |
216 |
aaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcc |
315 |
Q |
| |
|
|||||| |||| | |||| ||| ||||||| ||| || ||||||||||||||| ||||| || |||||||| |||||||||||||| |||| || |
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|
| T |
41469909 |
aaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaa |
41469810 |
T |
|
| Q |
316 |
tggctttttcatgatcctt |
334 |
Q |
| |
|
|||||||||||| |||||| |
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| T |
41469809 |
tggctttttcataatcctt |
41469791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 16408850 - 16408986
Alignment:
| Q |
198 |
attacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctcc |
297 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||| || ||| |
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|
| T |
16408850 |
attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcacgggacataagctcatttttcc |
16408949 |
T |
|
| Q |
298 |
gagcttccagttccagcctggctttttcatgatcctt |
334 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
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| T |
16408950 |
aagcttctagttccagcctggctttttcatgatcctt |
16408986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 166 - 334
Target Start/End: Complemental strand, 52472101 - 52471933
Alignment:
| Q |
166 |
attgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcag |
265 |
Q |
| |
|
||||||| |||||| | ||||||| ||||| ||||| |||| | |||||| ||||||||| ||||||||| ||||||||||| |||||||||||| |
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|
| T |
52472101 |
attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag |
52472002 |
T |
|
| Q |
266 |
atccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
334 |
Q |
| |
|
|||| | |||||||| ||||| || ||||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
52472001 |
atccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatcctt |
52471933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 334
Target Start/End: Original strand, 16413236 - 16413410
Alignment:
| Q |
160 |
tttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgctt |
259 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||| |||||||||| | | |||||||||||| | || || ||||||||||| ||| ||||| |
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|
| T |
16413236 |
tttagcattgctaccataaattcaaagagctaaaataaattacatgttttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgctt |
16413335 |
T |
|
| Q |
260 |
ctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
334 |
Q |
| |
|
|||||||||||| || || | ||||| || |||||| | |||||||||||||| |||||||||| |||||||| |
|
|
| T |
16413336 |
ctgcagatccttttctcgtaacataagttcattcctcagcgcttccagttccagtatggctttttcttgatcctt |
16413410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 16413110 - 16413221
Alignment:
| Q |
18 |
tttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaa-ttgatcactttcaaagaaatgtgttaaaatttt-agaaattgacctatc |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| ||||||| ||||| ||||||||| ||||||| ||| ||||| |||||| |||||||| |
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|
| T |
16413110 |
tttttgtgattggtccacttttaaagaagccgatttagtt---ctgtaaatttgatgactttcaaa-aaatgtgctaagattttaagaaatagacctatc |
16413205 |
T |
|
| Q |
116 |
-acaaaagtgtgttca |
130 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
16413206 |
aaaaaaagtgtgttca |
16413221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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