View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_11 (Length: 419)
Name: NF9703_high_11
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 71 - 407
Target Start/End: Complemental strand, 26829286 - 26828950
Alignment:
| Q |
71 |
ccttagagtttgcaaaaaacaatttacaacaacacctacattcatcgataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctac |
170 |
Q |
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| T |
26829286 |
ccttagagttttcaaaaaacaatttacagcaacgcctacattcatcgataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctac |
26829187 |
T |
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| Q |
171 |
aaccttcttggcacatccaatttgaaatccacacttgttagttgtagactccccacccaatgcatagtatacggcaaccccatagcttttcctaagtccg |
270 |
Q |
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| T |
26829186 |
aaccttcttggcacatccaatttgaaatccacacttgttagttgtagactccccacccaatgcatagtatacggcaaccccatagcttttcctaagtccg |
26829087 |
T |
|
| Q |
271 |
acgaacacgagattagaccacaaagttttagccataacaaagttcttggaagcatctcgaatacacataacgaatccgacacatttcaacgccaacgaga |
370 |
Q |
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|||||||||||||||||||||||| |||||| ||||| |||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26829086 |
acgaacacgagattagaccacaaaattttagtcataataaagttctcggaaacatcgcgaatacacataccgaatccgacacatttcaacgccaacgaga |
26828987 |
T |
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| Q |
371 |
acgacacatctgcattacactttagtctacctaccta |
407 |
Q |
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| T |
26828986 |
acgacacatctacattacactttagtctacctaccta |
26828950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 26829585 - 26829523
Alignment:
| Q |
19 |
aggtttctcgaacaaaagtatgagcatccttattcgt-----tctgagagaactcaaccttag |
76 |
Q |
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| T |
26829585 |
aggtttctcgaacaaaagtatgagcgtctttattcgtccgtctctgagagaactcaatcttag |
26829523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 13925784 - 13925654
Alignment:
| Q |
105 |
cctacattcatcgataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctacaaccttcttggcacatccaatttgaaatccacac |
204 |
Q |
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|||||| |||| ||||||||||||||||||| |||| || || |||||| || | ||||| |||||||||||||| | |||| |||| || |||||| |
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| T |
13925784 |
cctacactcattgataattgctccaaactcggagatgtcattgcttcctctattataataatctacaaccttctttg--catctaattcaaagtccacat |
13925687 |
T |
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| Q |
205 |
ttgttagttgtagactccccacccaatgcatag |
237 |
Q |
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| T |
13925686 |
ttgtaagttgtagattgcgcacccaatgaatag |
13925654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 12204920 - 12204790
Alignment:
| Q |
105 |
cctacattcatcgataattgctccaaactcgaagatatcgttacttcctttactgtaatagtctacaaccttcttggcacatccaatttgaaatccacac |
204 |
Q |
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| T |
12204920 |
cctacactcattgataattgctccaaactcggagatgtcattgcttcctctattataataatctacaaccttctttg--catctaattcaaagtccacat |
12204823 |
T |
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| Q |
205 |
ttgttagttgtagactccccacccaatgcatag |
237 |
Q |
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| T |
12204822 |
ttgtaagttgtagattgcgcacccaatgaatag |
12204790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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