View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_13 (Length: 398)
Name: NF9703_high_13
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 388
Target Start/End: Complemental strand, 339783 - 339418
Alignment:
| Q |
23 |
gaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccactacatcctcttgagctttgtaaagttcccaagc |
122 |
Q |
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| T |
339783 |
gaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccactacatcctcttgagctttgtaaagttcccaagc |
339684 |
T |
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| Q |
123 |
agcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgcatataggcatatataacattaacacacgcattctcggtaatacca |
222 |
Q |
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| T |
339683 |
agcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgcatataggcatatataacattaacacacgcattctcggtaatacca |
339584 |
T |
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| Q |
223 |
taacataaatgaaactgccattattataaacaacctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaagttttct |
322 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
339583 |
taacataaatgaaactgccattattataaataacctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaagttttct |
339484 |
T |
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| Q |
323 |
gataacgaaaccagctcctctgaggtccttaacagtttcaaagagaggaaccacccgaagcctatg |
388 |
Q |
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| T |
339483 |
gataacggaaccagctcctctgaggtccttaacagtttcaaagagaggaaccacccgaagcctatg |
339418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 42189298 - 42189453
Alignment:
| Q |
23 |
gaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccactacatcctcttgagctttgtaaagttcccaagc |
122 |
Q |
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|||||| ||| ||||| ||||||||||| | ||||| |||||||| || || ||||||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
42189298 |
gaccaatactgcctccgcggccatggaacagtgtaactttaataccataatcattgcaagcagctacaacatcctcctgagctttgtaaagttcccaagc |
42189397 |
T |
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| Q |
123 |
agcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgca |
178 |
Q |
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||| || ||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
42189398 |
agcagtgaagcggccagcatctttaccagaatcagaatatccaaccataacctgca |
42189453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 42189538 - 42189645
Alignment:
| Q |
255 |
acctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaa-gttttctgataacgaaaccagctcctctgaggtcctta |
353 |
Q |
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|||||||| |||||||| ||||| ||||||| || | ||||||||| |||||||||| || |||| | |||||| ||||||||||||| |||||||| |
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| T |
42189538 |
acctcttgatgtccattgtggttcttaatgacgtgctcgcggtaccagtctattgataaaaagtttccggataactgaaccagctcctctcaggtccttc |
42189637 |
T |
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| Q |
354 |
acagtttc |
361 |
Q |
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|| ||||| |
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| T |
42189638 |
acggtttc |
42189645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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