View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_high_17 (Length: 363)

Name: NF9703_high_17
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_high_17
NF9703_high_17
[»] chr8 (16 HSPs)
chr8 (12-343)||(15850349-15850680)
chr8 (12-347)||(28420979-28421323)
chr8 (12-347)||(15131846-15132191)
chr8 (80-244)||(44502306-44502469)
chr8 (16-338)||(1225998-1226330)
chr8 (167-313)||(18602984-18603130)
chr8 (12-181)||(37855098-37855276)
chr8 (85-231)||(18393548-18393693)
chr8 (81-209)||(27401839-27401967)
chr8 (82-208)||(10623253-10623379)
chr8 (264-344)||(10623406-10623486)
chr8 (11-193)||(3159777-3159959)
chr8 (146-344)||(13097519-13097711)
chr8 (80-132)||(18603152-18603204)
chr8 (304-347)||(31772666-31772709)
chr8 (167-248)||(44509336-44509416)
[»] chr3 (23 HSPs)
chr3 (12-344)||(11410621-11410962)
chr3 (12-347)||(43921827-43922167)
chr3 (12-325)||(21408754-21409084)
chr3 (167-342)||(26565402-26565577)
chr3 (85-347)||(10516047-10516308)
chr3 (146-289)||(14218479-14218623)
chr3 (146-343)||(17715726-17715926)
chr3 (146-343)||(19016955-19017155)
chr3 (85-336)||(10657329-10657580)
chr3 (23-256)||(27063689-27063931)
chr3 (195-277)||(49861099-49861181)
chr3 (196-337)||(27109225-27109366)
chr3 (230-337)||(27109623-27109730)
chr3 (12-83)||(27111150-27111220)
chr3 (110-193)||(49860462-49860545)
chr3 (14-83)||(26565251-26565319)
chr3 (33-83)||(49860395-49860444)
chr3 (12-83)||(17716000-17716068)
chr3 (12-83)||(19017229-19017297)
chr3 (299-347)||(27044221-27044269)
chr3 (146-209)||(29697032-29697095)
chr3 (108-170)||(2227278-2227340)
chr3 (34-83)||(14218415-14218463)
[»] chr7 (19 HSPs)
chr7 (14-343)||(37338649-37338985)
chr7 (14-347)||(27616265-27616596)
chr7 (81-331)||(46532870-46533121)
chr7 (214-347)||(10678441-10678573)
chr7 (203-339)||(44182338-44182474)
chr7 (21-253)||(32716489-32716728)
chr7 (84-191)||(45215999-45216106)
chr7 (110-347)||(6439784-6440027)
chr7 (85-193)||(22290882-22290990)
chr7 (262-347)||(45215901-45215989)
chr7 (12-83)||(44572571-44572641)
chr7 (146-192)||(44572501-44572547)
chr7 (262-320)||(44572423-44572481)
chr7 (12-73)||(10678278-10678338)
chr7 (41-83)||(44182753-44182794)
chr7 (11-52)||(11812685-11812726)
chr7 (11-52)||(11820705-11820746)
chr7 (138-191)||(43837239-43837292)
chr7 (262-346)||(22291006-22291090)
[»] chr6 (18 HSPs)
chr6 (14-347)||(14494319-14494661)
chr6 (12-343)||(12843841-12844182)
chr6 (16-343)||(17539959-17540295)
chr6 (15-343)||(1255545-1255886)
chr6 (151-343)||(57082-57275)
chr6 (11-295)||(19542074-19542368)
chr6 (167-347)||(34709054-34709236)
chr6 (12-193)||(19294323-19294511)
chr6 (12-83)||(12790571-12790641)
chr6 (243-347)||(19294509-19294611)
chr6 (80-171)||(34708943-34709034)
chr6 (12-153)||(34011225-34011375)
chr6 (12-153)||(34013475-34013625)
chr6 (15-232)||(2602031-2602255)
chr6 (306-347)||(34011087-34011128)
chr6 (306-347)||(34013722-34013763)
chr6 (214-274)||(34011158-34011218)
chr6 (214-274)||(34013632-34013692)
[»] chr4 (13 HSPs)
chr4 (81-344)||(17732789-17733055)
chr4 (80-347)||(40289034-40289299)
chr4 (98-297)||(31734528-31734724)
chr4 (80-347)||(45612317-45612582)
chr4 (173-256)||(3419960-3420042)
chr4 (12-172)||(54305594-54305763)
chr4 (89-347)||(2641164-2641422)
chr4 (81-287)||(44507704-44507909)
chr4 (222-347)||(18198694-18198820)
chr4 (262-347)||(54305814-54305901)
chr4 (169-347)||(658356-658537)
chr4 (12-150)||(55680675-55680822)
chr4 (110-192)||(24614581-24614664)
[»] chr2 (16 HSPs)
chr2 (22-342)||(26576009-26576340)
chr2 (80-347)||(34409462-34409728)
chr2 (12-347)||(9929569-9929934)
chr2 (12-342)||(32200726-32201047)
chr2 (83-347)||(4747961-4748224)
chr2 (12-343)||(27003973-27004318)
chr2 (12-316)||(44649879-44650182)
chr2 (214-347)||(13039027-13039161)
chr2 (168-343)||(15989951-15990128)
chr2 (80-193)||(13037323-13037436)
chr2 (12-83)||(41848957-41849027)
chr2 (291-347)||(17651477-17651533)
chr2 (304-347)||(41849237-41849280)
chr2 (11-53)||(18724894-18724936)
chr2 (13-56)||(34409762-34409805)
chr2 (82-151)||(16661253-16661322)
[»] chr5 (7 HSPs)
chr5 (12-325)||(32676536-32676858)
chr5 (146-347)||(40837984-40838183)
chr5 (80-243)||(38989237-38989397)
chr5 (16-131)||(40837748-40837872)
chr5 (12-53)||(41815795-41815836)
chr5 (12-83)||(10613162-10613232)
chr5 (291-344)||(38989140-38989194)
[»] chr1 (13 HSPs)
chr1 (12-347)||(32740788-32741128)
chr1 (12-347)||(23431805-23432152)
chr1 (82-338)||(9148890-9149143)
chr1 (85-347)||(48632466-48632725)
chr1 (196-344)||(18488339-18488488)
chr1 (146-248)||(126333-126435)
chr1 (12-256)||(7021540-7021796)
chr1 (81-193)||(18476522-18476635)
chr1 (81-233)||(3954966-3955117)
chr1 (85-232)||(3387675-3387821)
chr1 (8-53)||(16426366-16426411)
chr1 (82-133)||(125194-125245)
chr1 (288-343)||(126453-126508)
[»] scaffold0325 (1 HSPs)
scaffold0325 (14-238)||(12818-13051)
[»] scaffold0019 (1 HSPs)
scaffold0019 (110-335)||(69964-70190)
[»] scaffold0002 (1 HSPs)
scaffold0002 (222-347)||(288977-289103)
[»] scaffold1723 (1 HSPs)
scaffold1723 (15-160)||(404-557)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 15850680 - 15850349
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||  | ||||||||||||||||||||||||          |||| |||||||||||||    
T  15850680 ataggacaccgacaccattatgtatatattaatttatttatagatag-tctaaaatgaaaatcaaaatacatatataagtatctaatttgagcaaattat 15850582  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||           |||    
T  15850581 ttcattagaaaaagttataaaacaagatatcacagtatttgacatttatttattcatctactatcaaaaaagctaaaaatgttata-----------tgt 15850493  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtc 301  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  15850492 ctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagaaaaaaatatttcagatattcgtc 15850393  T
Q  302 tcagttgtccg--acacggctcgtataagtgttatataggtgtc 343  Q
    | |||||||||  ||||||||| |||||||||||||||||||||    
T  15850392 ttagttgtccgacacacggctcttataagtgttatataggtgtc 15850349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 28420979 - 28421323
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatcta----------acttgagcaaattat 101  Q
    ||||||||||||||||  || |||||| |||||||||||| |||| | |||||||||||||| ||||||||| ||          |||||||||| ||||    
T  28420979 ataggacaccgacaccattacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaaaatacatatataaacatttaacttgagcaatttat 28421077  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
     |||| |||||||||| || |||||||||||| |  |||| || |||||||||||||||| |||||||||||||||||| | ||||||||||  ||||||    
T  28421078 gtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatctactatcaaaaaagctaaaaacgatataatcaactataatgt 28421177  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa--tgtttcagatattcg 299  Q
    ||||||||  | |||||||||| ||||||||||| |||||||||||||||||||| ||  || |||||| ||||||| |||||  ||||| ||||||| |    
T  28421178 ctataacc-actaattgatcaagatttctcaaaatatatgtaactcttgtatctatggtgtgcggaagcgagagagaaaaaaaattgttttagatattag 28421276  T
Q  300 tctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||| |    |||||||| |||||||| |||||||||||||||||||||    
T  28421277 tctga-aactccgacacagctcgtatgagtgttatataggtgtcggac 28421323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 15132191 - 15131846
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||| ||||||||| |||||| |||||||||| | |||| | | |||||||||||| |||||||||          ||||||||||||| ||||    
T  15132191 ataggacaccaacaccgctacatatatgttaatttattcaaagacagtt-taaaatgaaaattaaaatacatatatagacatctaacttgagcaatttat 15132093  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    | ||| | |||||||| || | |||||||||| || |||| |  |||||||||| ||||| |||| ||||||||||||||| ||||||||||  ||||||    
T  15132092 t-catgataaaaagttctacagcaagatatcatagtatttgatctttatttatttatctactatcgaaaaagctaaaaatgatataatcaactataatgt 15131994  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa----tgtttcagatatt 297  Q
    |||||||| || |||||||||| |||||| |||||||||||||||| |||||||  ||  ||  ||||||||||||| |||||    ||||| |||||||    
T  15131993 ctataacc-cctaattgatcaatatttctaaaaacatatgtaactcctgtatctctggtgtgcagaagcaagagagaaaaaaaaaattgttt-agatatt 15131896  T
Q  298 cgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
     |||| |||||| |||||| |||| ||| |||||||||||||||||||||    
T  15131895 tgtctgagttgttcgacactgctcatatgagtgttatataggtgtcggac 15131846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 244
Target Start/End: Original strand, 44502306 - 44502469
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaa 179  Q
    |||| |||||||||||| ||||||||||| |||||||| || |||||||||||| |  |||| || |||||||||||||||  ||||||||||| |||||    
T  44502306 acatttaacttgagcaatttatttcatcataaaaagttctacaacaagatatcatactatttgacctttatttattcatctgctatcaaaaaagttaaaa 44502405  T
Q  180 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaa 244  Q
    ||  ||||||||||  |||||||||||||| || |||  ||||||||||||||||||||||||||    
T  44502406 ataatataatcaactataatgtctataacc-cctaatcaatcaacatttctcaaaacatatgtaa 44502469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 1225998 - 1226330
Alignment:
Q  16 gacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatct----------aacttgagcaaattatttca 105  Q
    ||||| |||||| | | ||||||| |||||||||||||||  | |||||||||||||||||||||||| |          || || ||||| ||||||||    
T  1225998 gacactgacaccaccacatatatagtaatttatttatagaggg-tctaaaatgaaaatcaaaatacatatgtaaacatataaattaagcaatttatttca 1226096  T
Q  106 tcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctat 205  Q
    |   ||||||||||||||||||||| || || |||| |  |||||||||||||||| |||||||||   |||||||||| |||||||| ||||| |||||    
T  1226097 ttgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaaaatt-taaaaatgttgtaatcaactttaatttctat 1226195  T
Q  206 aacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagaga-caaaaatgtttcagatattcgtctca 304  Q
    || |  | ||||||| |||||||||||| |||||| ||||||||||||||| |   |||||||  ||||||||  |||||| ||||| ||||| |||| |    
T  1226196 aaacctctaattgattaacatttctcaacacatatttaactcttgtatctacgatgtgtggaataaagagagagaaaaaatatttcaaatatttgtctga 1226295  T
Q  305 gttg-tccgacacggctcgtataagtgttatatag 338  Q
    |||| | ||||| ||||||||| |||||| |||||    
T  1226296 gttgtttcgacatggctcgtatgagtgttgtatag 1226330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 313
Target Start/End: Complemental strand, 18603130 - 18602984
Alignment:
Q  167 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatc-taaggaatgtg 265  Q
    ||||||||||||||||||||||||||   ||||||| ||   | || ||||||||||||||||||||||||||||||||||||||||| ||  | |||||    
T  18603130 aaaaaagctaaaaatgttataatcaattgtaatgtcaattcac-cctaattgatcaacatttctcaaaacatatgtaactcttgtatcataccgtatgtg 18603032  T
Q  266 gaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccga 313  Q
    ||||||||||||| ||||||| || ||||||| |||| ||||||||||    
T  18603031 gaagcaagagagaaaaaaatgctttagatatttgtctgagttgtccga 18602984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 37855098 - 37855276
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||||||||||||| |||||| || ||||||||| |||| | |||||||| ||||| | |||||||          |||| ||||| || ||||    
T  37855098 ataggacaccgacaccgctacatatatgttcatttatttaaagacgg-tctaaaataaaaattataatacatatataaacatctaatttgagaaatttat 37855196  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaat 181  Q
    ||||| ||||||||||||  |||||||||| | || ||||||| |||||||||||||||| ||||||||| | |||||||    
T  37855197 ttcatgagaaaaagttatgcaacaagatataatagtatttaacctttatttattcatctactatcaaaaaggttaaaaat 37855276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 18393693 - 18393548
Alignment:
Q  85 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 184  Q
    |||||||| ||| |||||| || | |||||||| || |||||||||  | || |||| || ||||||||| |||||| ||||||||||  |||||| |||    
T  18393693 taacttgaacaatttattttattaaaaaaagttttataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgtt 18393594  T
Q  185 ataatcaacgttaatgtctataacctcccaattgatcaacatttctc 231  Q
     |||||||| ||||||||||||||| |   |||||||||||||||||    
T  18393593 gtaatcaactttaatgtctataacc-cttgattgatcaacatttctc 18393548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 27401839 - 27401967
Alignment:
Q  81 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 180  Q
    |||||||||||||||| ||||||||| | ||||||||||| |||||||||  | || ||||  | ||||||||| |||||| |||  ||| |   |||||    
T  27401839 catctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaa 27401938  T
Q  181 tgttataatcaacgttaatgtctataacc 209  Q
     ||| |||||||| |||||||||||||||    
T  27401939 cgttgtaatcaactttaatgtctataacc 27401967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 10623253 - 10623379
Alignment:
Q  82 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaat 181  Q
    ||||||||||||||| ||||||| |   || || ||||||||||||||| ||||  || | || ||||||||| ||| || ||||||||||||||||||     
T  10623253 atctaacttgagcaacttatttctttcaaagaaattataaaacaagataccacaatatcttacttttatttatccatttagtatcaaaaaagctaaaaac 10623352  T
Q  182 gttataatcaacgttaatgtctataac 208  Q
     || | | |||| ||||||||||||||    
T  10623353 attgtgaccaactttaatgtctataac 10623379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 10623406 - 10623486
Alignment:
Q  264 tggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcg 344  Q
    ||||||||||||||| |||||||||| ||| ||| |||  |||||| ||||| | ||||||| ||| ||||||||||||||    
T  10623406 tggaagcaagagagaaaaaaatgttttagaaatttgtcaaagttgttcgacatgcctcgtatgagtcttatataggtgtcg 10623486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 3159777 - 3159959
Alignment:
Q  11 cataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaa-atacatctaacttgagcaaattatttcatcag 109  Q
    |||||||||||||||| ||||  | |||| |||||||||||| ||  |||||||| ||| ||||||| ||  ||||||||||||||| ||||||||| |     
T  3159777 cataggacaccgacactgctacctgtatactaatttatttat-gaaagatctaaattgagaatcaaatatgtatctaacttgagcaatttatttcattaa 3159875  T
Q  110 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaac 193  Q
    |||||| | || |||||| ||  | || ||||  | ||||||||| |||||| |||| |||||  |||| | ||| ||||||||    
T  3159876 aaaaaggtctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaatttaaacacgttgtaatcaac 3159959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 344
Target Start/End: Original strand, 13097519 - 13097711
Alignment:
Q  146 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaac 245  Q
    |||||||||||||||| |||  |||||   ||||||||| |||||||| |||||||| ||||||||    |||||||||||||||| | |||| | ||||    
T  13097519 tttatttattcatctactattgaaaaattaaaaaatgttttaatcaactttaatgtccataacctcttg-ttgatcaacatttctc-acacatctttaac 13097616  T
Q  246 tcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcg 344  Q
    ||||| |||||  |  |||||||||   |||||||||||    ||| | ||| || | | ||||||||||||  || ||||||||||||||||||||||    
T  13097617 tcttgaatctactgtgtgtggaagc---agagacaaaaa-aaatcaaacatttgtttgaattgtccgacacgcttcatataagtgttatataggtgtcg 13097711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 18603204 - 18603152
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatc 132  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||| ||||||    
T  18603204 acatctaacttaagcaagttatttcattagaaaaagttttaaaacacgatatc 18603152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 31772666 - 31772709
Alignment:
Q  304 agttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  31772666 agttgtccgacacgtctcgtatgagtgttatataggtatcggac 31772709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 44509336 - 44509416
Alignment:
Q  167 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactct 248  Q
    ||||||| |||| ||  |||||||||   ||||||||||||| ||| |||| ||||| |||||| |||||||||||||||||    
T  44509336 aaaaaagttaaacataatataatcaataataatgtctataac-tcctaattaatcaatatttcttaaaacatatgtaactct 44509416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 11410621 - 11410962
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||||||||||||| |||||| |||||||||||||| || | ||||||||||||||||||||||||          ||||||||||||| ||||    
T  11410621 ataggacaccgacaccgctacatatatgttaatttatttatatacgg-tctaaaatgaaaatcaaaatacatatttaagcatctaacttgagcaagttat 11410719  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| |||||||||| ||||| ||||||||  || ||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||  |||| |    
T  11410720 ttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctactatcaaaaaggctaaaactgttataatcaacaataatat 11410819  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtc 301  Q
    |||| ||| || ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||  |||||| |      
T  11410820 ctattaccccctaattgatcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagtaagagagaaaaaaatgttttcgatatttgca 11410919  T
Q  302 tcagttgtccgacacggctcgtataagtgttatataggtgtcg 344  Q
    | ||||||| |||| ||||||||| ||||||||||||||||||    
T  11410920 taagttgtctgacatggctcgtatgagtgttatataggtgtcg 11410962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 43922167 - 43921827
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||||||||| ||| ||| || |||||||||||||| | || ||||| |||||||| |||||||||          ||||||||||||| ||||    
T  43922167 ataggacaccgacacctctacatacatgttaatttatttatata-tggtctaacatgaaaataaaaatacatatccaaacatctaacttgagcaagttat 43922069  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| |||||||||| |||||||||| |||  || |||| |  |||||||||||||||| ||||||||||||||||||||||||||||||   ||||||    
T  43922068 ttcattagaaaaagttctaaaacaagacatcgtagtatttgatctttatttattcatctaatatcaaaaaagctaaaaatgttataatcaattgtaatgt 43921969  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtc 301  Q
    | || | | ||  ||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| ||||||| || ||||||| |||    
T  43921968 caattaac-cctgattgatcaacatttctcaaaacatatgtaactcttgtatctactgtatgtggaagcaagagagaaaaaaatgctttagatatttgtc 43921870  T
Q  302 tcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    | |||||||||| |||| ||| || |||||  ||||||||||||||    
T  43921869 tgagttgtccgaaacggttcg-atgagtgt--tataggtgtcggac 43921827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 21409084 - 21408754
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaataca----------tctaacttgagcaaattat 101  Q
    |||||| || |||||||||| |||||| |||||||||||||| || | |||||||||||||||||||||||          ||||| |||||||| ||||    
T  21409084 ataggatactgacaccgctacatatatgttaatttatttatatacgg-tctaaaatgaaaatcaaaatacaaatataagaatctaatttgagcaagttat 21408986  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| ||||||| || ||||| ||||||||  || |||| || |||||||||||||||| ||| ||||| | ||||||||||||||||||   ||||||    
T  21408985 ttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctactataaaaaaggttaaaaatgttataatcaattgtaatgt 21408886  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacata--------tgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcaga 293  Q
     | | ||| || ||||||||||||||||||||||||||        |||||||||||||||||||  |||||||||||||||||| |||||||||| |||    
T  21408885 ttgttaccccctaattgatcaacatttctcaaaacatatgtacatatgtaactcttgtatctaagttatgtggaagcaagagagaaaaaaatgttttaga 21408786  T
Q  294 tattcgtctcagttgtccgacacggctcgtat 325  Q
    |||| || | ||||||||||||||||||||||    
T  21408785 tatttgtttgagttgtccgacacggctcgtat 21408754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 167 - 342
Target Start/End: Original strand, 26565402 - 26565577
Alignment:
Q  167 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgg 266  Q
    ||||| ||||||||||||||||| |||  |||||||||| ||  || || |||||||||||||| |||||||||||||||||| ||||||||  ||||||    
T  26565402 aaaaaggctaaaaatgttataattaactgtaatgtctattactccctaaatgatcaacatttctaaaaacatatgtaactcttatatctaagatatgtgg 26565501  T
Q  267 aagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgt 342  Q
    |||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  26565502 aagcaagagagaaaaaaatgttttagatatttgtctgagttgtccgacacggctcgtatgagtgttatataggtgt 26565577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 85 - 347
Target Start/End: Complemental strand, 10516308 - 10516047
Alignment:
Q  85 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 184  Q
    |||||||||||| ||||||||| |||||||||| ||||| ||||||||  || |||| ||  ||||||||||| ||  ||||||||| | ||||||||||    
T  10516308 taacttgagcaagttatttcattagaaaaagttctaaaataagatatcgtagtatttgaccattatttattcaactcctatcaaaaaggttaaaaatgtt 10516209  T
Q  185 ataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 284  Q
    ||||| | |  |||||| ||| ||| || ||||||| ||||||| | ||||||||||||||||||||||||| || |  |||||| |||||||| |||||    
T  10516208 ataataagctataatgtatattaccccctaattgattaacattttttaaaacatatgtaactcttgtatctacggtacatggaagtaagagaga-aaaaa 10516110  T
Q  285 tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    | ||| ||||||| |  | ||||||| |||||| ||||||| ||| ||||| |||||||||||    
T  10516109 tattttagatatttgcatgagttgtctgacacgactcgtatgagtattatacaggtgtcggac 10516047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 289
Target Start/End: Original strand, 14218479 - 14218623
Alignment:
Q  146 tttatttattcatctattatcaaaaaag-ctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaa 244  Q
    |||||||||| ||||| ||| ||||||  ||||||||||||||||||||  |||||||||| ||| || ||||||||||||||| |||||| |||||| |    
T  14218479 tttatttatttatctactataaaaaaaaactaaaaatgttataatcaactgtaatgtctattaccccctaattgatcaacatttatcaaaatatatgtga 14218578  T
Q  245 ctcttgtatctaaggaatgtggaagcaagagagacaaaaatgttt 289  Q
    ||||||| |||| || |||||||||||||||||| ||||||||||    
T  14218579 ctcttgtgtctacggtatgtggaagcaagagagaaaaaaatgttt 14218623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 17715926 - 17715726
Alignment:
Q  146 tttatttattcatctattatcaaaaaa-gctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaa 244  Q
    |||||||||||||||||||| |||||| || |||||  || |||||||| ||||| ||||||||| |  |||||||  |||||| |||| ||||||||||    
T  17715926 tttatttattcatctattataaaaaaaagccaaaaacattgtaatcaactttaatttctataaccccataattgatacacatttatcaacacatatgtaa 17715827  T
Q  245 ctcttgtatctaaggaatgtggaagcaagagag--acaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgt 342  Q
    |||||||||| | | | ||||||| ||||||||  | |||||||||||||| ||| || | |||||||| |||  ||| |||| ||||||||||||||||    
T  17715826 ctcttgtatcgacgaagtgtggaaccaagagagaaataaaaatgtttcagacatttgtttgagttgtccaacaatgcttgtatgagtgttatataggtgt 17715727  T
Q  343 c 343  Q
    |    
T  17715726 c 17715726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 19017155 - 19016955
Alignment:
Q  146 tttatttattcatctattatcaaaaaa-gctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaa 244  Q
    |||||||||||||||||||| |||||| || |||||  || |||||||| ||||| ||||||||| |  |||||||  |||||| |||| ||||||||||    
T  19017155 tttatttattcatctattataaaaaaaagccaaaaacattgtaatcaactttaatttctataaccccataattgatacacatttatcaacacatatgtaa 19017056  T
Q  245 ctcttgtatctaaggaatgtggaagcaagagag--acaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgt 342  Q
    |||||||||| | | | ||||||| ||||||||  | |||||||||||||| ||| || | |||||||| |||  ||| |||| ||||||||||||||||    
T  19017055 ctcttgtatcgacgaagtgtggaaccaagagagaaataaaaatgtttcagacatttgtttgagttgtccaacaatgcttgtatgagtgttatataggtgt 19016956  T
Q  343 c 343  Q
    |    
T  19016955 c 19016955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 336
Target Start/End: Complemental strand, 10657580 - 10657329
Alignment:
Q  85 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 184  Q
    |||||| || || |||||| || |||||||||| ||||||||||||||  |  |||| || |||||||||||| ||  | ||||||||| ||||||||||    
T  10657580 taacttaagtaagttattttattagaaaaagttctaaaacaagatatcgtataatttgacctttatttattcaactcct-tcaaaaaagttaaaaatgtt 10657482  T
Q  185 ataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag-acaaaa 283  Q
    |||||||    |||||| | | | |  | ||||||||||||||| ||||||||||||||| ||||||||||| || |  |||||| ||||||| | ||||    
T  10657481 ataatcatatgtaatgtattttagcctctaattgatcaacatttttcaaaacatatgtaaatcttgtatctacggtacatggaagtaagagagaaaaaaa 10657382  T
Q  284 atgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatat 336  Q
    || ||| |||||||  | | ||||||| |||||||||||||| ||||||||||    
T  10657381 atattttagatatttatatgagttgtctgacacggctcgtatgagtgttatat 10657329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 27063689 - 27063931
Alignment:
Q  23 acaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaa 112  Q
    |||||| || |||||||||||||||||||||||| | |||||||||| |||||||| ||||          ||||||||||||  ||||||| | | |||    
T  27063689 acaccggtacatatatattaatttatttatagacgg-tctaaaatgataatcaaaacacatatttaagcatctaacttgagcagtttatttctttaaaaa 27063787  T
Q  113 aagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcc 212  Q
    | ||| |||||||||||| || |  || | || |||||||||||||||| | ||| |||||||||||||||| |||| ||| | ||| ||||||||  |     
T  27063788 acgttctaaaacaagataccataatatatgacctttatttattcatctactgtcataaaagctaaaaatgttgtaattaacttaaatttctataactcct 27063887  T
Q  213 caattgatcaacatttctcaaaacatatgtaactcttgtatcta 256  Q
     |||||||||||||||||||| | ||||||||||||| ||||||    
T  27063888 aaattgatcaacatttctcaacatatatgtaactcttatatcta 27063931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 49861099 - 49861181
Alignment:
Q  195 ttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag 277  Q
    ||||||||||| ||| || ||||||||||||| ||||||||| ||||||||||||||||||| ||  ||| ||||||||||||    
T  49861099 ttaatgtctatgaccccctaattgatcaacatatctcaaaacttatgtaactcttgtatctacggtgtgtagaagcaagagag 49861181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 27109366 - 27109225
Alignment:
Q  196 taatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagata 295  Q
    ||||||||| ||||  | ||||||||||||| || ||||||||||||||| ||||||| || ||  ||| ||||||||||||| |||||  ||||| |||    
T  27109366 taatgtctacaacccactaattgatcaacatatcacaaaacatatgtaacccttgtatttacggtgtgtagaagcaagagagaaaaaaaactttcaaata 27109267  T
Q  296 ttcgtctcagttgtccgacacggctcgtataagtgttatata 337  Q
    || ||||  |||||  ||||||  |||||| |||||||||||    
T  27109266 tttgtctaggttgtatgacacgattcgtatgagtgttatata 27109225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 27109730 - 27109623
Alignment:
Q  230 tcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagt 329  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||||| |||||||||||| ||||| |||  | ||||  |||| | |||| || |||    
T  27109730 tcaaaacatatgtaactcttgtatttacggtgtgtggaagcaagagagaaaaaaatgtttcaaatatttgtccaaattgtatgacatgactcgcatgagt 27109631  T
Q  330 gttatata 337  Q
    ||||||||    
T  27109630 gttatata 27109623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 27111220 - 27111150
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||||||||||||||  || |||||| |||||||||||||| || | ||||||||||||||||||||||||    
T  27111220 ataggacaccgacaccattacatatatgttaatttatttataaac-ggtctaaaatgaaaatcaaaatacat 27111150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 49860462 - 49860545
Alignment:
Q  110 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaac 193  Q
    |||||||| |||||||||||||    | |||| ||||||||||||| ||||| |||||||| |||||||||| |||||||||||    
T  49860462 aaaaagttctaaaacaagatatagtggtatttgacatttatttatttatctactatcaaaagagctaaaaatcttataatcaac 49860545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 26565251 - 26565319
Alignment:
Q  14 aggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||||| ||||||| || |||||| |||||||||||||| | || ||||||||||||||||||||||||    
T  26565251 aggacactgacaccgttacatatatgttaatttatttatata-tggtctaaaatgaaaatcaaaatacat 26565319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 49860395 - 49860444
Alignment:
Q  33 atatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  49860395 atatattttcatttatttataga-tgatctaaaatgaaaatcaaaatacat 49860444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 17716068 - 17716000
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||||||| |||||||||| ||||||| ||||||||||| |   | |||||||||| ||||||||||||||    
T  17716068 ataggacactgacaccgctacatatatactaatttatttaga---taatctaaaatgcaaatcaaaatacat 17716000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 19017297 - 19017229
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||||||| |||||||||| ||||||| ||||||||||| |   | |||||||||| ||||||||||||||    
T  19017297 ataggacactgacaccgctacatatatactaatttatttaga---taatctaaaatgcaaatcaaaatacat 19017229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 27044221 - 27044269
Alignment:
Q  299 gtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    |||| |||||| ||||||||||||||| ||||||||| |||||||||||    
T  27044221 gtctgagttgttcgacacggctcgtatgagtgttatacaggtgtcggac 27044269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 29697032 - 29697095
Alignment:
Q  146 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacc 209  Q
    ||||||||| |||||  ||||  ||||||||||||||||| ||||||  |||||||||||||||    
T  29697032 tttatttatacatctgctatcgtaaaagctaaaaatgttagaatcaattttaatgtctataacc 29697095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 2227340 - 2227278
Alignment:
Q  108 agaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaa 170  Q
    |||||||||| || |||||||| ||| || |||| || |||||||||||||||| ||||||||    
T  2227340 agaaaaagttctacaacaagatgtcatagtatttgacctttatttattcatctactatcaaaa 2227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 14218415 - 14218463
Alignment:
Q  34 tatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||| |||||||||||||| |  ||||||||||||||||||||||||||    
T  14218415 tatatgttaatttatttatataa-gatctaaaatgaaaatcaaaatacat 14218463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 37338985 - 37338649
Alignment:
Q  14 aggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattattt 103  Q
    ||||||||| ||||| || |||||| ||||||||||||||||| | |||||| |||||||||||||||||          ||||||||||||||||||||    
T  37338985 aggacaccggcaccgttacatatatgttaatttatttatagacag-tctaaattgaaaatcaaaatacatatataagcatctaacttgagcaaattattt 37338887  T
Q  104 catcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtct 203  Q
    ||| |||||| ||||| ||||||||||||| || |||| || |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||| |    
T  37338886 cattagaaaatgttatcaaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaactttaatgttt 37338787  T
Q  204 ataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctc 303  Q
    | || | || ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||     
T  37338786 aaaatc-cctaattgatcaacatttctcaaagcatatgtaactcttgtatctacggtatgtggaagcaagagaga-aaaaatgtttcagatatttgtctg 37338689  T
Q  304 agttgtccgacacggctcgtataagtgttatataggtgtc 343  Q
    ||||||| | |||| ||||||| ||| |||||||| ||||    
T  37338688 agttgtctgtcacgactcgtatgagtattatatagatgtc 37338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 27616265 - 27616596
Alignment:
Q  14 aggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatac----------atctaacttgagcaaattattt 103  Q
    |||||||||||||||||| || ||| |||||||||||||||  || |||||||||||||||||| |||          |||| |||||||||  ||||||    
T  27616265 aggacaccgacaccgctacatgtatgttaatttatttatagg-tggtctaaaatgaaaatcaaagtacgtacataagcatcttacttgagcagtttattt 27616363  T
Q  104 catcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtct 203  Q
     || |||| ||||| ||||||||||||||| || |||| || ||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  27616364 aattagaacaagttctaaaacaagatatcatagtatttgacttttatttatacatctactatcagaaaagctaaaaatgttataatcaactttaatgtct 27616463  T
Q  204 ataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctc 303  Q
    |||||| || |||||| || ||||||||           |||||||||||||| |   ||||||||||||||||| |||||||||||||||||| ||||     
T  27616464 ataaccccctaattgaccatcatttctc-----------aactcttgtatctacgacgtgtggaagcaagagagaaaaaaatgtttcagatatttgtctg 27616552  T
Q  304 agttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||||||||||||||| |||| ||||| ||||||||| |||||    
T  27616553 agttgtccgacacggcttgtatgagtgtcatataggtgccggac 27616596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 81 - 331
Target Start/End: Original strand, 46532870 - 46533121
Alignment:
Q  81 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 180  Q
    ||||||||||||| || |||||||||  ||||||||| ||||| |||||| |  || |||| ||  || |||||||| ||  | ||||||||||||||||    
T  46532870 catctaacttgaggaagttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctgctgtcaaaaaagctaaaaa 46532969  T
Q  181 tgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagaca 280  Q
    ||||||||||||   |||||| ||||||| || |||||||||||||| ||||||| ||||||| |||||||||||| |   |||| |||||||||||| |    
T  46532970 tgttataatcaattgtaatgtttataacc-cctaattgatcaacattcctcaaaatatatgtagctcttgtatctatgatttgtgtaagcaagagagaaa 46533068  T
Q  281 aaaa-tgtttcagatattcgtctcagttg-tccgacacggctcgtataagtgt 331  Q
    |||| ||||||||||||| |||| |||||  |||||| ||||||||| |||||    
T  46533069 aaaactgtttcagatatttgtctaagttgccccgacatggctcgtatgagtgt 46533121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 10678441 - 10678573
Alignment:
Q  214 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccga 313  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||| | | |||||||| | ||||| |||| ||||||| ||    
T  10678441 aattgatcaatatttctcaaaacatacgtaactcttgtatctacggtatgtggaagcaagagaaaaagaaatgttt-aaatatttgtctgagttgtcaga 10678539  T
Q  314 cacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||| |||||| |||||||||||||||||||||    
T  10678540 cacggttcgtatgagtgttatataggtgtcggac 10678573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 339
Target Start/End: Complemental strand, 44182474 - 44182338
Alignment:
Q  203 tataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtct 302  Q
    |||||||||| ||||||| ||| |||||||| | |||| ||| ||||||||||| ||  ||||||| ||||||||| |||||||||| ||| ||| ||||    
T  44182474 tataacctcctaattgattaacttttctcaacatatatctaattcttgtatctacggtgtgtggaaccaagagagagaaaaatgttttagacatttgtct 44182375  T
Q  303 cagttgtccgacacggctcgtataagtgttatatagg 339  Q
     | || ||| |||||| |||||| |||||||||||||    
T  44182374 aaattatccaacacggatcgtatgagtgttatatagg 44182338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 32716728 - 32716489
Alignment:
Q  21 cgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatac----------atctaacttgagcaaattatttcatcaga 110  Q
    |||||| |||| ||||||||||||| ||||||||| || ||||||||||||||||||||||          |||||||||||  || || ||| || | |    
T  32716728 cgacactgctacatatatattaattaatttatagattg-tctaaaatgaaaatcaaaatacatatatgtatatctaacttgaataatttgttttattaaa 32716630  T
Q  111 aaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacct 210  Q
    ||||||| ||||||||||||  | || |||| |  |||||||||||||| | |||| |||||| |||||||| |  ||||||  |||||||||||||  |    
T  32716629 aaaagttctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtctataa--t 32716532  T
Q  211 cccaattgatcaacatttctcaaaacatatgtaactcttgtat 253  Q
    |||   | ||||| ||||||||| | |||||||||||||||||    
T  32716531 ccctcattatcaaaatttctcaatatatatgtaactcttgtat 32716489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 45216106 - 45215999
Alignment:
Q  84 ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgt 183  Q
    ||||||||||||| |||| |||| |||||||||| || || ||||| ||| |  |||| || |||||||||||||||| | ||||||||||||||||||     
T  45216106 ctaacttgagcaatttatgtcattagaaaaagttctacaataagatgtcatattatttgacctttatttattcatctactgtcaaaaaagctaaaaatga 45216007  T
Q  184 tataatca 191  Q
    ||||||||    
T  45216006 tataatca 45215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 347
Target Start/End: Original strand, 6439784 - 6440027
Alignment:
Q  110 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaac----gttaatgtctat 205  Q
    |||||||||||| ||||||||  | || |||| |||| |||||||||| ||| |||| |||||| |||||||||| ||||||||     |||||||||||    
T  6439784 aaaaagttataacacaagatacgatagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatcaactttaattaatgtctat 6439883  T
Q  206 aacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag----acaaaa-atgtttcagatattcgt 300  Q
    || ||||  | |||||||||||||||  |||| ||||||||| || ||||| ||  || ||||| |||||||    |||||| |||||||| | ||| ||    
T  6439884 aa-ctcctcaatgatcaacatttctc--aacacatgtaactcatgcatctatggtgtgcggaagtaagagagtaaaacaaaatatgtttcaaacatttgt 6439980  T
Q  301 ctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    || |||| ||| ||||| ||||||| ||| |||||||  ||||||||    
T  6439981 ctgagttatccaacacgtctcgtatgagtattatataaatgtcggac 6440027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 22290882 - 22290990
Alignment:
Q  85 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 184  Q
    |||||| | ||| ||||||||| | |||||||| || ||||||||||||  | |||| || |||||||||| ||||| |||||||||||||||||||  |    
T  22290882 taacttaaacaatttatttcattaaaaaaagttctacaacaagatatcattgtatttgacctttatttattaatctactatcaaaaaagctaaaaattat 22290981  T
Q  185 ataatcaac 193  Q
    |||||||||    
T  22290982 ataatcaac 22290990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 45215989 - 45215901
Alignment:
Q  262 tgtggaagcaagagagacaaaaa---tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||||||||||||||| |||||   ||||| ||||||| | ||  ||||||||||||||||||||| ||||||| |||||||||||||    
T  45215989 tgtggaagcaagagagaaaaaaaaattgttttagatatttgactgggttgtccgacacggctcgtatgagtgttacataggtgtcggac 45215901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 44572641 - 44572571
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    |||||| ||||||||||||| |||||| |||||||||||| ||  || ||||||||||||||||||||||||    
T  44572641 ataggaaaccgacaccgctacatatatgttaatttatttaaag-ttggtctaaaatgaaaatcaaaatacat 44572571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 44572547 - 44572501
Alignment:
Q  146 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaa 192  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  44572547 tttatttattcatctactatcaaaaaagctaaaaatgatataatcaa 44572501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 44572481 - 44572423
Alignment:
Q  262 tgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggct 320  Q
    ||||||||||||||||| |||| ||||| ||||||| |||| |||||||||||| ||||    
T  44572481 tgtggaagcaagagagaaaaaattgttttagatatttgtctgagttgtccgacatggct 44572423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 10678278 - 10678338
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaat 73  Q
    |||||||||||||| || || ||||||||||||||||||||| | || ||||||||||||||    
T  10678278 ataggacaccgacatcgttagatatatattaatttatttatata-tggtctaaaatgaaaat 10678338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 44182794 - 44182753
Alignment:
Q  41 taatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  44182794 taatttatttatagac-gatctaaaataaaaatcaaaatacat 44182753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 11812726 - 11812685
Alignment:
Q  11 cataggacaccgacaccgctaaatatatattaatttatttat 52  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  11812726 cataggacaccgacacagctacctatatattaatttatttat 11812685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 11820746 - 11820705
Alignment:
Q  11 cataggacaccgacaccgctaaatatatattaatttatttat 52  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  11820746 cataggacaccgacaccactacctatatattaatttatttat 11820705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 43837292 - 43837239
Alignment:
Q  138 atttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatca 191  Q
    |||||||||||||||||  |||||||||| ||||| |||| |||||| ||||||    
T  43837292 atttaacatttatttatcaatctattatcgaaaaaactaataatgttgtaatca 43837239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 22291006 - 22291090
Alignment:
Q  262 tgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcgga 346  Q
    ||||||||||||||| | |||| | ||| ||||| | ||   |||||||| ||||||||||||| |||| |||||| ||||||||    
T  22291006 tgtggaagcaagagaaaaaaaattattttagataattgtgcgagttgtcctacacggctcgtatgagtggtatatacgtgtcgga 22291090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 14494661 - 14494319
Alignment:
Q  14 aggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattattt 103  Q
    |||||||||||||||||| |||||| |||||||||||| |||| | |||||||||||||| |||||||||          ||| ||| ||||| ||||||    
T  14494661 aggacaccgacaccgctacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaaaatacatatataaacatctatctttagcaatttattt 14494563  T
Q  104 catcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtct 203  Q
    ||| |||||||||| || ||||| |||||| || |||| || ||||||||||| |||||||||||||||| |||||||| ||||||||||  | ||||||    
T  14494562 cattagaaaaagttctacaacaaaatatcatagtatttgacctttatttattcgtctattatcaaaaaagttaaaaatgatataatcaactatgatgtct 14494463  T
Q  204 ataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaa-aaatgtttcagatattcgtct 302  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||| ||| ||||| || || ||||| ||||||| || |    
T  14494462 ataacc-cctaattgatcaacatttctcaaaacatatgtaattcttgtatctatggtgtgtggaaacaatagagaaaacaattgtttaagatatttgtgt 14494364  T
Q  303 cagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
     |||||||||||||||||||||| |||||||||||||||||||||    
T  14494363 gagttgtccgacacggctcgtattagtgttatataggtgtcggac 14494319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 12843841 - 12844182
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||  |||| |||| |||||| |||||||||||| |||| | |||||||||||||| |||||||||          |||||||||||||  |||    
T  12843841 ataggacactaacactgctacatatatgttaatttatttaaagacgg-tctaaaatgaaaatgaaaatacatatataaacatctaacttgagcaatatat 12843939  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| |||| ||||| || || ||||||||| || |||| || |||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||    
T  12843940 ttcattagaacaagttctacaataagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgt 12844039  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaa--aatgtttcagatattcg 299  Q
     ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||| |||  | ||||| ||||||  |    
T  12844040 gtataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgcgtggaagcaagagagaaaaaatattgttttagatatctg 12844138  T
Q  300 tctcagttgtccgacacggctcgtataagtgttatataggtgtc 343  Q
    | | ||||||| ||||| |||||||| ||||||||||| |||||    
T  12844139 tgtgagttgtctgacacagctcgtatgagtgttatataagtgtc 12844182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 17539959 - 17540295
Alignment:
Q  16 gacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttca 105  Q
    ||||||||||||  || |||||| |||||||||||| |||| | |||||||||||||| |||||||||          |||||||| |||| ||||  ||    
T  17539959 gacaccgacaccattacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaaaatacatatataaacatctaacttgggcaatttatgaca 17540057  T
Q  106 tcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctat 205  Q
    | |||||||||| |  || ||||||||| || |||| || |||||||||| ||||| |||||||||||||||||||| ||||||||||  |||  | |||    
T  17540058 ttagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctactatcaaaaaagctaaaaatgatataatcaactataacttttat 17540157  T
Q  206 aacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa-tgtttcagatattcgtctca 304  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||| ||||| ||||| ||||||| |||| |    
T  17540158 aacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaattgttttagatatttgtctga 17540256  T
Q  305 gttgtccgacacggctcgtataagtgttatataggtgtc 343  Q
    |||||||||||||| || ||| |||||||||||||||||    
T  17540257 gttgtccgacacggttcatatgagtgttatataggtgtc 17540295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 1255886 - 1255545
Alignment:
Q  15 ggacaccgacaccgctaa---atatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatcta----------acttgagcaaattat 101  Q
    |||||||||||||||||    |||||| ||||||||||| ||||| | |||||||||||||||||||||||| ||          |||||||||| ||||    
T  1255886 ggacaccgacaccgctactacatatatgttaatttatttgtagacgg-tctaaaatgaaaatcaaaatacatatataagcatttaacttgagcaagttat 1255788  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    || || |||||||||| ||||||||||||||  || |||| ||||||||||||  ||||  |||||||||||||||||||||||||||||||  ||||||    
T  1255787 tttattagaaaaagttctaaaacaagatatcgtagtatttgacatttatttatgtatctgctatcaaaaaagctaaaaatgttataatcaactgtaatgt 1255688  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaa-aatgtttcagatattcgt 300  Q
    |||||||| || |||||||||||||| |||||||| |||||| ||||||||||||     ||||||||||||||||| ||| |||||||  |||||| ||    
T  1255687 ctataaccccctaattgatcaacattcctcaaaacctatgtagctcttgtatctattatttgtggaagcaagagagaaaaataatgttt-tgatatttgt 1255589  T
Q  301 ctcagttg-tccgacacggctcgtataagtgttatataggtgtc 343  Q
    || |||||  || |||| ||||||||  ||||||||||||||||    
T  1255588 ctgagttgcccctacacagctcgtatgcgtgttatataggtgtc 1255545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 151 - 343
Target Start/End: Original strand, 57082 - 57275
Alignment:
Q  151 ttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttg 250  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||  | | |||||||||||||||| ||||||||||||||||||    
T  57082 ttattcatctactatcaaaaaaggtaaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctccaaacatatgtaactcttg 57181  T
Q  251 tatctaaggaatgtggaagcaagagagacaaa-aatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtc 343  Q
    |||||| || |||||||||||||||||| ||| |||  || |||||||  ||| |||||||||||||||||||||| ||||||| |||||||||    
T  57182 tatctacggtatgtggaagcaagagagaaaaataataatttagatatttatcttagttgtccgacacggctcgtatgagtgttacataggtgtc 57275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 19542074 - 19542368
Alignment:
Q  11 cataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat-----------ctaacttgagcaaatt 99  Q
    ||||||||| ||| || |||| |||||| ||||||||||||||||| | | |||||| |||||||||||||||           |||||||||  || |     
T  19542074 cataggacatcgatactgctacatatatgttaatttatttatagacgg-tataaaattaaaatcaaaatacatacataaggcatctaacttgaaaaattg 19542172  T
Q  100 atttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaat 199  Q
    |||||||  |||||| || |||||||| |||||  || ||||  | |||||||||||||||| |||||| || ||||||| ||||||||||||| |||||    
T  19542173 atttcattggaaaaaattctaaaacaaaatatcttagtatttgtcctttatttattcatctactatcaagaatgctaaaattgttataatcaactttaat 19542272  T
Q  200 gtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaagg-aatgtggaagcaagagagacaaaaatgtttcagata 295  Q
     ||| ||||| |  ||||| |||| ||||||||||||| ||||||||||||||| || ||  |||||||||||||||||| |||||||||| |||||    
T  19542273 atctctaacc-cttaattgttcaatatttctcaaaacaaatgtaactcttgtatgtacggttatgtggaagcaagagagaaaaaaatgttttagata 19542368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 347
Target Start/End: Original strand, 34709054 - 34709236
Alignment:
Q  167 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgg 266  Q
    |||||| || |||||| ||||||||||  |||||| ||||||| || ||||||||||||||| |||||| |||| |||||||| |||||| ||  ||||     
T  34709054 aaaaaaacttaaaatgatataatcaactataatgtatataacc-cctaattgatcaacatttttcaaaatatatataactcttatatctatggcgtgtga 34709152  T
Q  267 aagcaagagagacaaaaat-gtttcagatattcgtctcagttgtccgacacggctcgtata--agtgttatataggtgtcggac 347  Q
    |||||||||||| |||| | |||  ||||||| || | |||| ||||||||  ||||||||  |||||||||||||||||||||    
T  34709153 aagcaagagagaaaaaagtagttgtagatatttgtgtaagttttccgacacaactcgtatatgagtgttatataggtgtcggac 34709236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 19294323 - 19294511
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||||| ||||||| |||||| |||||||||||| |||| | ||||||||| |||| |||||||||          ||||||| ||||| ||||    
T  19294323 ataggacaccgataccgctacatatatgttaatttatttaaagacgg-tctaaaatggaaattaaaatacatatataaacatctaacttaagcaatttat 19294421  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagct-aaaaatgttataatcaac 193  Q
    ||||| ||||||||||    |||||||||||| || |||| || |||||||||||||||| ||| ||||||||| ||||||| ||||||||||    
T  19294422 ttcattagaaaaagttc---aacaagatatcatagtatttgacctttatttattcatctactatgaaaaaagctaaaaaatgatataatcaac 19294511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 12790641 - 12790571
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    |||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||| |||||    
T  12790641 ataggacaccgacaccgctacatatatgttaatttatttatatac-gatctaaaatgaaaatcaaattacat 12790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 19294509 - 19294611
Alignment:
Q  243 aactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgt 342  Q
    |||||||||||||| ||  ||||||| ||||||||| |||| ||||| ||||||| || | | |||||||||||||||||||| ||||||||| ||||||    
T  19294509 aactcttgtatctatggtgtgtggaa-caagagaga-aaaattgttttagatatttgtgtgacttgtccgacacggctcgtatgagtgttatacaggtgt 19294606  T
Q  343 cggac 347  Q
    |||||    
T  19294607 cggac 19294611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 34708943 - 34709034
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaa 171  Q
    |||||||||||||| || ||||||||| |||||||||| |  |||||||||||| || |||| || |||||||||||||||| ||| |||||    
T  34708943 acatctaacttgagaaatttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactataaaaaa 34709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 34011375 - 34011225
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||||||| ||  ||||| |||||||||||| |||| | |||||| ||||||| |||||||||          |||||| |||||| ||||    
T  34011375 ataggacaccgacaccgttacttatatgttaatttatttaaagaccg-tctaaagtgaaaattaaaatacatatataaacatctaactcgagcaatttat 34011277  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttattta 153  Q
     |||||| |||||||| || |||||||||||| || |||| |||||||||||    
T  34011276 gtcatcataaaaagttctacaacaagatatcatagtatttgacatttattta 34011225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 34013475 - 34013625
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||||||| ||  ||||| |||||||||||| |||| | |||||| ||||||| |||||||||          |||||| |||||| ||||    
T  34013475 ataggacaccgacaccgttacttatatgttaatttatttaaagaccg-tctaaagtgaaaattaaaatacatatataaacatctaactcgagcaatttat 34013573  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttattta 153  Q
     |||||| |||||||| || |||||||||||| || |||| |||||||||||    
T  34013574 gtcatcataaaaagttctacaacaagatatcatagtatttgacatttattta 34013625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 2602031 - 2602255
Alignment:
Q  15 ggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaataca----------tctaacttgagcaaattatttc 104  Q
    ||||||||||||| |||  |||||||||||||||||||| |  |||||||| | | ||||||||||||          |||||||| |||| |||| |||    
T  2602031 ggacaccgacacctctacctatatattaatttatttataaaa-gatctaaattaagaatcaaaatacaaacatatgcatctaactt-agcagattacttc 2602128  T
Q  105 atcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtcta 204  Q
    || |||||||| |||| |||||||||  | || ||||| | ||||||||| ||| || |||| |||||  ||||  |||| |||||||| ||||||| ||    
T  2602129 attagaaaaaggtatataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgttta 2602228  T
Q  205 taacctcccaattgatcaacatttctca 232  Q
    ||| | || | |||||||||||||||||    
T  2602229 taaac-cctagttgatcaacatttctca 2602255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 34011128 - 34011087
Alignment:
Q  306 ttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  34011128 ttgtctgacacggctcgtatgagtgttatataggtgtcggac 34011087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 34013722 - 34013763
Alignment:
Q  306 ttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  34013722 ttgtctgacacggctcgtatgagtgttatataggtgtcggac 34013763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 34011218 - 34011158
Alignment:
Q  214 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaaga 274  Q
    ||||||||| ||||||||||||||| || |||||||||||||| ||  || ||||||||||    
T  34011218 aattgatcaccatttctcaaaacatgtgcaactcttgtatctatggtgtgcggaagcaaga 34011158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 34013632 - 34013692
Alignment:
Q  214 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaaga 274  Q
    ||||||||| ||||||||||||||| || |||||||||||||| ||  || ||||||||||    
T  34013632 aattgatcaccatttctcaaaacatgtgcaactcttgtatctatggtgtgcggaagcaaga 34013692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 81 - 344
Target Start/End: Original strand, 17732789 - 17733055
Alignment:
Q  81 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacattt-atttattcatctattatcaaaaaagctaaaa 179  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||  || |||| || ||| ||||||||||||| |||||||||||||||||    
T  17732789 catctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaa 17732888  T
Q  180 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag-- 277  Q
    ||||||||||||||  |||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| |  |||||||||||||||||      
T  17732889 atgttataatcaactgtaatgtctattacctcctaattaatcaacatttctcaaaacacatgtaactcttgtatctacgatatgtggaagcaagagagaa 17732988  T
Q  278 acaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcg 344  Q
    | |||||||||||| ||||| |||  |||||||||||||||||||||| | ||||||| ||||||||    
T  17732989 aaaaaaatgtttcatatatttgtcagagttgtccgacacggctcgtatgaatgttatagaggtgtcg 17733055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 40289299 - 40289034
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaa 179  Q
    |||| |||||||  ||| ||||||||| |||||||||| || |||||||||||| || |||| || |||||||||||||||| |||||||||| ||||||    
T  40289299 acatttaacttggacaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaaactaaaa 40289200  T
Q  180 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagac 279  Q
    ||    |||||||   ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||     
T  40289199 ataacttaatcaattgtaatgtctacaacc-cctaattgattaacatttctcaaaacatatgtaaatcttgtatctatggtgtgtggaagcaagagaga- 40289102  T
Q  280 aaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    |||||||||| ||||||| || | |||||||||||| | ||||||| |||||||||||||||||||||    
T  40289101 aaaaatgttttagatatttgtttgagttgtccgacatgactcgtatgagtgttatataggtgtcggac 40289034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 297
Target Start/End: Original strand, 31734528 - 31734724
Alignment:
Q  98 ttatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgtta 197  Q
    ||||||||| |||||||||| ||||||||||||||  || ||||  | |||||||||||||||| |||||||| ||||||||||||||||||||||  ||    
T  31734528 ttatttcattagaaaaagttctaaaacaagatatcgtagtattttcc-tttatttattcatctactatcaaaagagctaaaaatgttataatcaactata 31734626  T
Q  198 atgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatatt 297  Q
    |||||||| |||  |||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||| |||||||    
T  31734627 atgtctattacc--ccatgtgatcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagcaagagaaagaaaaatgttttagatatt 31734724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 45612582 - 45612317
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaa 179  Q
    ||||| ||||||||||| |||| |||| |||||| ||| || |||||||||| |     ||| || |||||||||||||||| |||||||||||||||||    
T  45612582 acatccaacttgagcaatttatgtcattagaaaatgttctacaacaagatatta-----tttgacctttatttattcatctactatcaaaaaagctaaaa 45612488  T
Q  180 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctc-aaaacatatgtaactcttgtatctaaggaatgtggaagcaagagaga 278  Q
    ||| ||||||||||  |||||||||||| | ||  ||| ||||||||||||| ||||||||||||||||||||||||| ||  || ||||||||||||||    
T  45612487 atgatataatcaactataatgtctataaac-ccttattaatcaacatttctcaaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagaga 45612389  T
Q  279 caaaaa---tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
     |||||   ||||| ||||||| || | |||||||||||||| ||||||| ||||||||| |||||||||||    
T  45612388 aaaaaaaattgttttagatatttgtttgagttgtccgacacgactcgtatgagtgttatacaggtgtcggac 45612317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 3419960 - 3420042
Alignment:
Q  173 gctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 256  Q
    |||||||||  ||||||||||  |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  3419960 gctaaaaattatataatcaactataatatctataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatcta 3420042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 54305594 - 54305763
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatcta----------acttgagcaaattat 101  Q
    |||||||||||||||||||| |||||| |||||||||||| |||| | | |||||||||||| ||||||||| ||          |||||||||| ||||    
T  54305594 ataggacaccgacaccgctacatatatgttaatttatttaaagacggtt-taaaatgaaaattaaaatacatatacaaacatttaacttgagcaatttat 54305692  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaa 172  Q
    || || |||||||||| ||  ||||||||||| || |||| || |||||||||||||||| ||| ||||||    
T  54305693 ttaattagaaaaagttctacgacaagatatcatagtatttgacctttatttattcatctaatataaaaaaa 54305763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 347
Target Start/End: Original strand, 2641164 - 2641422
Alignment:
Q  89 ttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataa 188  Q
    |||||||| |||||||||   |||||||| |||||||| |||  |  | |||| || |||||||||| ||||| ||| |||||||  |||||  || |||    
T  2641164 ttgagcaacttatttcattgaaaaaagttctaaaacaaaatactatggtatttgacctttatttatttatctactataaaaaaagtcaaaaacattgtaa 2641263  T
Q  189 tcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtt 288  Q
    ||||| ||||| ||||||||  |   ||||||||||||||||||| ||||||| ||||  || ||||      ||||||| ||||||||| |||||||||    
T  2641264 tcaactttaatttctataactccatgattgatcaacatttctcaacacatatgaaactagtgcatcttctatgtgtggaaccaagagagagaaaaatgtt 2641363  T
Q  289 tcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
     |||| ||| |||| |||| | | |||| |||||||  |||||||||||||| ||||||    
T  2641364 ccagacatttgtctgagtttttcaacacagctcgtacgagtgttatataggtatcggac 2641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 287
Target Start/End: Original strand, 44507704 - 44507909
Alignment:
Q  81 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 180  Q
    ||||||| ||||| || ||||||||| | ||||| || |||||||| |||| |   ||||| || ||||||||| |||||  ||| ||||||| ||||||    
T  44507704 catctaatttgagaaatttatttcattaaaaaaa-ttctaaaacaaaatatgatgacatttgacctttatttatccatcttctataaaaaaagataaaaa 44507802  T
Q  181 tgttataatcaacgttaatgtctataacctcccaattgatc-aacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagac 279  Q
    |||| ||||  || ||||||||||||| | | || |||||| |||||||||||| | |||| |||||| ||| |||| ||  |||||||||||||||||     
T  44507803 tgttgtaattgactttaatgtctataatccctca-ttgatctaacatttctcaacatatatttaactcatgtgtctatggtgtgtggaagcaagagagag 44507901  T
Q  280 aaaaatgt 287  Q
    ||||||||    
T  44507902 aaaaatgt 44507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 347
Target Start/End: Complemental strand, 18198820 - 18198694
Alignment:
Q  222 aacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa-tgtttcagatattcgtctcagttgtccgacacggct 320  Q
    ||||||| |||| | |||| ||||| ||||||||| |   ||||||||||||||||| ||||| ||||||||| |   |||||||||||| || | | ||    
T  18198820 aacatttatcaacatatatttaacttttgtatctatgttgtgtggaagcaagagagagaaaaaatgtttcagaaaaatgtctcagttgtctgatatgtct 18198721  T
Q  321 cgtataagtgttatataggtgtcggac 347  Q
    ||||| |||||||||||||||||||||    
T  18198720 cgtatgagtgttatataggtgtcggac 18198694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 54305814 - 54305901
Alignment:
Q  262 tgtggaagcaagagagacaaaaa--tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||||||||||||||| |||||  ||||| ||||||| || | ||||||| |||||||||||||| |||||| ||||||||| ||||    
T  54305814 tgtggaagcaagagagagaaaaaattgttttagatatttgtgtgagttgtctgacacggctcgtatgagtgttgtataggtgttggac 54305901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 347
Target Start/End: Complemental strand, 658537 - 658356
Alignment:
Q  169 aaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaa 268  Q
    ||||| |||||||||| |||||||| | ||| ||||||| |    ||||| ||||||||| |||  ||||||||||||||||| |||| ||  |||||||    
T  658537 aaaagttaaaaatgttgtaatcaacttaaatttctataaacctttaattgttcaacatttttcagcacatatgtaactcttgtttctacggtgtgtggaa 658438  T
Q  269 gcaagagagacaaaaa---tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
     ||||||| | |||||   | ||||| | ||| | || |||||| ||| ||||||||| | |||||| ||||||||||||||    
T  658437 ccaagagacaaaaaaaaaatatttcatacatttgactgagttgttcgaaacggctcgtttgagtgttgtataggtgtcggac 658356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 55680675 - 55680822
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||||||| ||  ||||| |||||||||||| |||| | |||||| ||||||| |||||||||          |||||| |||||| || |    
T  55680675 ataggacaccgacaccgttacttatatgttaatttatttaaagaccg-tctaaagtgaaaattaaaatacatatataaacatctaactcgagcaatttct 55680773  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttat 150  Q
     ||||||||||||||| || |||||||||||| || |||| ||||||||    
T  55680774 gtcatcagaaaaagttctacaacaagatatcatagtatttgacatttat 55680822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 24614581 - 24614664
Alignment:
Q  110 aaaaagttataaaacaagatatcacagcatttaacattt-atttattcatctattatcaaaaaagctaaaaatgttataatcaa 192  Q
    ||||||||||||||||| |||| | ||  |||||||||| |||||| |||||| ||||||||||| ||||||| || |||||||    
T  24614581 aaaaagttataaaacaaaatatgatagtttttaacattttatttatccatctactatcaaaaaagttaaaaatattgtaatcaa 24614664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 26576009 - 26576340
Alignment:
Q  22 gacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaa 111  Q
    ||||||| || |||||| |||||||||||| |||| |||||||||||||||| |||||||||          ||||||||||||| |||| |||| ||||    
T  26576009 gacaccgttacatatattttaatttatttaaagac-gatctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttatgtcattagaa 26576107  T
Q  112 aaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctc 211  Q
    |||||| || |||||||||||| || |||| || |||||||||||||||| ||||||| |||||||||| | ||||||||||  ||||||||||||||      
T  26576108 aaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaataagctaaaaacgatataatcaactataatgtctataacc-a 26576206  T
Q  212 ccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa---tgtttcagatattcgtctcagttg 308  Q
    | ||| ||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||| |||||   ||||| | ||||| || | |||||    
T  26576207 ctaatcgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagagaaaaaatttgttttaaatatttgtttgagttg 26576306  T
Q  309 tccgacacggctcgtataagtgttatataggtgt 342  Q
    ||||||||||||||||| ||||||||||||||||    
T  26576307 tccgacacggctcgtatgagtgttatataggtgt 26576340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 34409728 - 34409462
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatca-aaaaagctaaa 178  Q
    ||||||||||||||||| ||| | ||| |||||||||| || |||||||||| | || |||| || |||||||||| |||||   ||| |||||||||||    
T  34409728 acatctaacttgagcaatttagt-cattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctaccgtcagaaaaagctaaa 34409630  T
Q  179 aatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagaga 278  Q
    |||| ||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||  || |||| |||||||||    
T  34409629 aatgatataatcaactataatgtctataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaatcaagagaga 34409531  T
Q  279 caaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
     |||| ||||| ||||| | || | |||||| | ||||  ||||||| |||||||||||||||||||||    
T  34409530 gaaaattgttttagatagttgtttgagttgttcaacacaactcgtatgagtgttatataggtgtcggac 34409462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 9929569 - 9929934
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||||||| |||| |||| |||||| |||||||||||| |||| | |||||||||||||| |||||||||          |||| |||||||| ||||    
T  9929569 ataggacaccaacactgctacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaaaatacatatataaacatctaatttgagcaatttat 9929667  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| |||||||||| || |||||||||||| || |||| || |||||||||||||||| ||||||||| ||| |||||| ||| ||||||  ||||||    
T  9929668 ttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaatgctcaaaatgatatgatcaactgtaatgt 9929767  T
Q  202 ctataacctc-----------------ccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 284  Q
    |||||||| |                 | | ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||| |||||    
T  9929768 ctataacccctgtaatgtctataacccctatttgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgtggaagcaagatagaaaaaaa 9929867  T
Q  285 ----tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
        | ||| ||||||| |||  ||||||  ||||||||| |||| |||||||||||||||||||||    
T  9929868 aacttattttagatatttgtcagagttgtttgacacggctggtatgagtgttatataggtgtcggac 9929934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 32201047 - 32200726
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||||||  ||||||||| |||||||||||| |||| | |||||||||||||| |||||||||          ||||||||||||| ||||    
T  32201047 ataggacaccgacaccattaaatatatgttaatttatttaaagacgg-tctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttat 32200949  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
     |||| |||||||||| || |||||||||||| || |||| || |||||||||||||||| |||||||||||||||||| | ||||| ||   |||||      
T  32200948 gtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaacgatataacca---ttaat-- 32200854  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa--tgtttcagatattcg 299  Q
                   |||||| ||||||||||||||||||||||||||||||| | ||  || |||||||||||||| |||||  ||||| |||||||      
T  32200853 ---------------tgatcagcatttctcaaaacatatgtaactcttgtatccatggcgtgcggaagcaagagagagaaaaaattgttttagatatttt 32200769  T
Q  300 tctcagttgtccgacacggctcgtataagtgttatataggtgt 342  Q
    ||| |||||||||||||||||||||| | ||||||||||||||    
T  32200768 tctgagttgtccgacacggctcgtatgactgttatataggtgt 32200726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 83 - 347
Target Start/End: Complemental strand, 4748224 - 4747961
Alignment:
Q  83 tctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatg 182  Q
    |||||||||||||| |||||||||  ||||||||| ||||||||| ||  | || |||| || |||||||||||||||  |||  || || |||||||||    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  183 ttataatcaacgttaatgtct--ataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagaca 280  Q
     | |||||||| |||||||||  |||||| | || | |||||||||||| ||| ||||  |||||||||| ||||| ||  ||||||||||| || || |    
T  4748124 ctgtaatcaactttaatgtctctataacccctcagt-gatcaacatttcacaacacat--gtaactcttggatctacggtgtgtggaagcaatagtgaaa 4748028  T
Q  281 aaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    |||| |||||||| ||| ||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  4748027 aaaaagtttcagacatttgtctcagttgtccgagatggctcgtatgagtgttatataggtgtcggac 4747961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 27003973 - 27004318
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||||||||||  ||||| |||||||||||| |||| | |||||||||||||  |||||||||          |||||||||| || ||||    
T  27003973 ataggacaccgacaccgctacgtatatgttaatttatttaaagacgg-tctaaaatgaaaactaaaatacatatataaacatctaacttgagaaatttat 27004071  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatcta---ttatcaaaaaagctaaaaatgttataatcaacgttaa 198  Q
    ||||| | |||||||| |  |||||||||||| || |||| || ||||||||||||||||   | |  |||||| ||||||||| ||||||||||  |||    
T  27004072 ttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactgtaaaaaaaaaaactaaaaatgatataatcaactataa 27004171  T
Q  199 tgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaat-gtttcagatatt 297  Q
    |||  |||||| || ||||||||||||||| |||||||||||  |||||||||||||| || ||||| |||||| ||||| |||| | |||  | |||||    
T  27004172 tgtacataacc-cctaattgatcaacatttttcaaaacatatacaactcttgtatctatggcatgtgaaagcaaaagagaaaaaagtagttgtaaatatt 27004270  T
Q  298 cgtctcagttgtccgacacggctcgtata--agtgttatataggtgtc 343  Q
     || | |||| ||||||||| ||||||||  | |||||||||||||||    
T  27004271 tgtgtaagttttccgacacgactcgtatatgaatgttatataggtgtc 27004318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 44650182 - 44649879
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatctaacttgagcaaattatttcatc-aga 110  Q
    ||||||||  ||||| |||| ||||||||||||||||||||| |  | ||||||||| | ||  | |  ||| ||| |||||||| |||||||||  | |    
T  44650182 ataggacattgacactgctacatatatattaatttatttataaatag-tctaaaatgtacatacataagcatataaattgagcaatttatttcattgaaa 44650084  T
Q  111 aaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacct 210  Q
    |||| ||||||||||||||| || || |||| || |||||||||||||||| ||||||||||| |||||||||| |||||||| ||||| ||||||| |     
T  44650083 aaaaattataaaacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaactttaatttctataagcc 44649984  T
Q  211 cccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagaga-caaaaatgtttcagatattcgtctcagttgt 309  Q
    || ||||||||||||||| |||| |||||| |||||||  |||||| |   ||||||| |||||||||  |||||||||  | | ||| |||| ||||||    
T  44649983 cctaattgatcaacatttttcaacacatatataactct--tatctacgttgtgtggaaccaagagagagaaaaaatgttctaaacatttgtctgagttgt 44649886  T
Q  310 ccgacac 316  Q
    |||||||    
T  44649885 ccgacac 44649879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 13039027 - 13039161
Alignment:
Q  214 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa-tgtttcagatattcgtctcagttgtccg 312  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||  || |||||||||||| | ||||| ||||| ||||||| |||| || |||| |    
T  13039027 aattgatcaacatttctcataacatatgtaactcttgtatctatggtgtgcggaagcaagagataaaaaaattgttttagatatttgtctgagctgtctg 13039126  T
Q  313 acacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||  ||| ||| ||||||||| | |||||||||    
T  13039127 acacaactcatatgagtgttataaatgtgtcggac 13039161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 343
Target Start/End: Complemental strand, 15990128 - 15989951
Alignment:
Q  168 aaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgga 267  Q
    |||| |||||||||||| | || ||| ||||| ||||||||| || ||||| |||||||||||||| ||||||||||||||| |||||| |   ||||||    
T  15990128 aaaacgctaaaaatgttgtgattaactttaatttctataacccccaaattggtcaacatttctcaacacatatgtaactcttatatctacgttgtgtgga 15990029  T
Q  268 agcaagagaga--caaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtc 343  Q
      |||||||||   ||||| ||| |||||||  |||| |||||| | ||||||||||||| | ||||||||| |||||    
T  15990028 tccaagagagaaggaaaaaagttccagatatatgtctgagttgttcaacacggctcgtatgactgttatataagtgtc 15989951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 13037323 - 13037436
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaa 179  Q
    ||||||||||||||||| |||| ||||  ||||||||| || |||||||||||| || |||| |  |||||||||||||||| ||||||||||  |||||    
T  13037323 acatctaacttgagcaatttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactatcaaaaaaattaaaa 13037422  T
Q  180 atgttataatcaac 193  Q
    | | |||| |||||    
T  13037423 acgatatagtcaac 13037436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 41848957 - 41849027
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||||||||||||||||||  |||||||||||||||||||| | | ||||||| ||| |||||||||||||    
T  41848957 ataggacaccgacaccgctatctatatattaatttatttataaaat-atctaaattgagaatcaaaatacat 41849027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 17651477 - 17651533
Alignment:
Q  291 agatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||||| |||| |||||||||||||| ||| ||||||||||||||| |||||||||    
T  17651477 agatatttgtctaagttgtccgacacgcctcatataagtgttatataagtgtcggac 17651533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 41849237 - 41849280
Alignment:
Q  304 agttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  41849237 agttgtccgacacgcctcatataagtgttatataggtgtcggac 41849280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 18724936 - 18724894
Alignment:
Q  11 cataggacaccgacaccgctaaatatatattaatttatttata 53  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  18724936 cataggacaccgacaccgctacctatatattaatttatttata 18724894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 34409805 - 34409762
Alignment:
Q  13 taggacaccgacaccgctaaatatatattaatttatttatagac 56  Q
    |||||||||||||||  || ||||||||||||||||||||||||    
T  34409805 taggacaccgacaccattagatatatattaatttatttatagac 34409762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 16661322 - 16661253
Alignment:
Q  82 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatt 151  Q
    ||||||||||||||| |||||| || | |||||||| ||||||||||||  | || ||||||| ||||||    
T  16661322 atctaacttgagcaatttattttattaaaaaaagttctaaaacaagataggatagtatttaacctttatt 16661253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 32676858 - 32676536
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||||||| | |||| |||||| ||||||||||| ||||| | ||||||||||||||||||||||||          |||| |||||||| ||||    
T  32676858 ataggacaccgaccctgctacatatatgttaatttatttttagacgg-tctaaaatgaaaatcaaaatacatacataagcatctaa-ttgagcaatttat 32676761  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgt 201  Q
    ||||| |||||||||||||||||||||||||| |  |||| |  || ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  32676760 ttcattagaaaaagttataaaacaagatatcatattatttgatctt-atttattcatctactatcaaaaaagttaaaaatgttataatcaactttaatgt 32676662  T
Q  202 ctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa--tgtttcagatattcg 299  Q
    ||||| || || |||||| ||||||||||||||||||||||||||||||||| ||     ||||||||||||||||| |||||  ||||| ||||||| |    
T  32676661 ctatatccccctaattgaacaacatttctcaaaacatatgtaactcttgtatttacaatgtgtggaagcaagagagaaaaaaacttgtttaagatatttg 32676562  T
Q  300 tctcagttgtccgacacggctcgtat 325  Q
    ||| ||||||  ||||| ||||||||    
T  32676561 tctaagttgtttgacacagctcgtat 32676536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 146 - 347
Target Start/End: Original strand, 40837984 - 40838183
Alignment:
Q  146 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaac 245  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||  |||||| ||| ||| || ||||||||||||||||||||||||||||||||    
T  40837984 tttatttattcatctactatcaaaaa-gctaaaaatgttataataaactataatgtttattacc-cctaattgatcaacatttctcaaaacatatgtaac 40838081  T
Q  246 tcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcgg 345  Q
    ||||||||||| || || ||||||||||||  | |||||||||| ||| ||| |||| |||||||||||||| || |||| |||||||||||| ||||||    
T  40838082 tcttgtatctacggtatctggaagcaagaggaaaaaaaatgttttagacatttgtctgagttgtccgacacgacttgtatgagtgttatatagatgtcgg 40838181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 38989397 - 38989237
Alignment:
Q  80 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaa 179  Q
    ||||||||||||||||| |||| |||| |||||||||| || |||||||||||| || |||| || |||||||||||||||| |||||||| |  |||||    
T  38989397 acatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaa 38989298  T
Q  180 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgta 243  Q
    ||| |||||||||   |||||||||||||| || ||||||||||||||| || |||||||||||    
T  38989297 atgatataatcaa--ataatgtctataacc-cctaattgatcaacatttatcgaaacatatgta 38989237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 40837748 - 40837872
Alignment:
Q  16 gacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttca 105  Q
    ||||| |||||||||| |||||| |||||||||||||| || | ||||||||||||||||||||||||          ||||||||||||||||||||||    
T  40837748 gacactgacaccgctagatatatgttaatttatttatatacgg-tctaaaatgaaaatcaaaatacatatataagcatctaacttgagcaaattatttca 40837846  T
Q  106 tcagaaaaagttataaaacaagatat 131  Q
    | |||||||||| |||||||||||||    
T  40837847 ttagaaaaagttctaaaacaagatat 40837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 41815836 - 41815795
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttata 53  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  41815836 ataggacaccgacaccgctacatatatattaatttatttata 41815795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 10613162 - 10613232
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 83  Q
    ||||||||| ||||||| || |||||| |||||||||||| ||||  ||||||||||||||  |||||||||    
T  10613162 ataggacactgacaccgttacatatatgttaatttatttaaagac-aatctaaaatgaaaactaaaatacat 10613232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 38989194 - 38989140
Alignment:
Q  291 agatattcgtctcagtt-gtccgacacggctcgtataagtgttatataggtgtcg 344  Q
    ||||||| |||| |||| |||||||||||||||||| |||||||||||| |||||    
T  38989194 agatatttgtctgagtttgtccgacacggctcgtatgagtgttatatagttgtcg 38989140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 32740788 - 32741128
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    ||||||||| |||||| ||| |||||| ||||||||| || ||| || |||||||||||||| |||||||||          ||||||||||||| ||||    
T  32740788 ataggacactgacaccactacatatatgttaatttatctaaaga-tggtctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttat 32740886  T
Q  102 ttcatcagaaaaagttataaaacaagatatcaca--gcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaat 199  Q
    || || ||||||||||    |||||||||||| |  | |||| || ||||||||||||||||  |||||||||||||||||||  ||||||||   ||||    
T  32740887 ttaattagaaaaagttc---aacaagatatcatatagtatttgacctttatttattcatctaccatcaaaaaagctaaaaatg--ataatcaattgtaat 32740981  T
Q  200 gtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa-tgtttcagatattc 298  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||||| |||||||     
T  32740982 gtctataacc-cccaattgatcaacatttcacaaaacatatgtaactcttgtatctatggtgtgtggaagcaagagagaaaaaaattgttttagatattt 32741080  T
Q  299 gtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    | || ||||||  ||||||||||| |||||||||||||| |||||||||    
T  32741081 gcctgagttgtttgacacggctcgcataagtgttatata-gtgtcggac 32741128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 23431805 - 23432152
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattat 101  Q
    |||||| |||||||  |||| |||||| |||||||||||||| || | ||||||||||||||||||||||||          ||||||||||||| ||||    
T  23431805 ataggataccgacagtgctacatatatgttaatttatttatatacgg-tctaaaatgaaaatcaaaatacatatataagcatctaacttgagcaagttat 23431903  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaa--- 198  Q
    ||||| |||||||||| |||||||| |||||  || |||| ||||| ||||||||||||| ||||||||||| |||||||||||||||| ||| |||       
T  23431904 ttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattcatttattcatctactatcaaaaaagttaaaaatgttataatctacggtaatgt 23432003  T
Q  199 ----tgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagat 294  Q
        ||||||| ||| || ||||| || ||| |||||||||||||||||||||||||||||   | ||||||||  | |||||| |||||||||  ||||    
T  23432004 ctattgtctattaccccctaattgttc-acacttctcaaaacatatgtaactcttgtatcttctgtatgtggaa--atgagaga-aaaaatgttctagat 23432099  T
Q  295 attcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    |||  ||| |||||||||||||||||||||| ||||||||||| |||||||||    
T  23432100 atttatctgagttgtccgacacggctcgtatgagtgttatataagtgtcggac 23432152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 82 - 338
Target Start/End: Complemental strand, 9149143 - 9148890
Alignment:
Q  82 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaat 181  Q
    |||||||||||| || ||||||||| |||||||  | ||||||||||||||| || |||| || |||||||||| ||||| |||||||||||||||||||    
T  9149143 atctaacttgagaaatttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctactatcaaaaaagctaaaaat 9149044  T
Q  182 gttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaa 281  Q
    ||||||  |||| |||||||||||||||  |||||||||| ||||||||  || |||| ||||||||||||||||     || |||||||||||| | ||    
T  9149043 gttatagccaactttaatgtctataacc-accaattgatctacatttct-taatcatacgtaactcttgtatctacaatttgcggaagcaagagataaaa 9148946  T
Q  282 aaatgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatatag 338  Q
    ||||||||||| |||| | || ||||||||||||||||| |||| ||||||||||||    
T  9148945 aaatgtttcagttatt-ggctgagttgtccgacacggcttgtatcagtgttatatag 9148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 347
Target Start/End: Complemental strand, 48632725 - 48632466
Alignment:
Q  85 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 184  Q
    |||||||||||  |||||||||   |||||||| |||||||||||| || || |||| || ||||||||||| |||| |||||||||||||||||| |||    
T  48632725 taacttgagcagtttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgtt 48632626  T
Q  185 ataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 284  Q
     |||||||| ||||| ||||||||| |  |||||||||||||||||||| ||||||| |||||||||||||| ||  ||| ||| ||||||| | |||||    
T  48632625 gtaatcaactttaatttctataaccccgtaattgatcaacatttctcaacacatatgcaactcttgtatctacggtgtgtagaaccaagaga-aaaaaaa 48632527  T
Q  285 tgtttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcggac 347  Q
    ||||||||| ||| || | ||||||| |||| ||||||| | |||||  ||||||||||||||    
T  48632526 tgtttcagacatttgtttgagttgtctgacatggctcgtgtgagtgt--tataggtgtcggac 48632466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 196 - 344
Target Start/End: Original strand, 18488339 - 18488488
Alignment:
Q  196 taatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag-acaaaaatgtttcagat 294  Q
    |||||||||| |||||| |||| ||||||||||||||||||| |||||||||||| ||||| |  ||||||||||||||||| | |||||||||||| ||    
T  18488339 taatgtctattacctccaaattaatcaacatttctcaaaacacatgtaactcttggatctacgatatgtggaagcaagagagaaaaaaaatgtttcatat 18488438  T
Q  295 attcgtctcagttgtccgacacggctcgtataagtgttatataggtgtcg 344  Q
    ||| |||  |||||||||||| ||||||||| | ||||||||||||||||    
T  18488439 atttgtcagagttgtccgacatggctcgtatgaatgttatataggtgtcg 18488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 126333 - 126435
Alignment:
Q  146 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctccc-aattgatcaacatttctcaaaacatatgtaa 244  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  126333 tttatttattcatctactattaaaaa-gttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctcaaaacatatgtaa 126431  T
Q  245 ctct 248  Q
    ||||    
T  126432 ctct 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 7021796 - 7021540
Alignment:
Q  12 ataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaata----------catctaacttgagcaaattat 101  Q
    |||||| ||| | ||||||  ||||||||||||||||||||| || | | |||||||||||||||||||          ||||||||||| |||| ||||    
T  7021796 ataggataccaataccgcttcatatatattaatttatttataaacggtt-taaaatgaaaatcaaaatatatacataaacatctaacttgcgcaatttat 7021698  T
Q  102 ttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaa-gctaaaaatgttataatcaacgtta--a 198  Q
    || ||   |||||||| |||||||| ||| ||||  |||| || |||||||||| ||||| |||||||||| || ||||||||| |||||||| |||  |    
T  7021697 tttattgaaaaaagttctaaaacaaaataccacaagatttgacctttatttatttatctactatcaaaaaaagccaaaaatgttgtaatcaactttataa 7021598  T
Q  199 tgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 256  Q
    | |||||||||  | |||| ||||||||||||||| ||||||||||||||| ||||||    
T  7021597 tttctataacccgctaatttatcaacatttctcaacacatatgtaactcttatatcta 7021540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 18476522 - 18476635
Alignment:
Q  81 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcattt-aacatttatttattcatctattatcaaaaaagctaaaa 179  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||  || |||| | | |||||||||||||||| |||||||||||||||||    
T  18476522 catctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaa 18476621  T
Q  180 atgttataatcaac 193  Q
    || || ||||||||    
T  18476622 atattgtaatcaac 18476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 3954966 - 3955117
Alignment:
Q  81 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 180  Q
    |||||||||||||||| ||||||||| | |||||||| ||||| ||||||  |  | |||| || ||||||||| |||||| |||| |||||||||||||    
T  3954966 catctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaa 3955065  T
Q  181 tgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaa 233  Q
     ||| |||||||| ||||| ||| ||||| ||   ||||||||||||||||||    
T  3955066 cgttgtaatcaactttaatctctgtaacc-ccttgttgatcaacatttctcaa 3955117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 3387675 - 3387821
Alignment:
Q  85 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 184  Q
    |||||||| ||| |||||| || | |||||||| || |||||||||  | || |||| || ||||||||||||||||  ||| |||||  |||||| |||    
T  3387675 taacttgaacaatttattttattaaaaaaagttctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgtt 3387774  T
Q  185 ataatcaacgttaatgtctataacctcccaattgatcaacatttctca 232  Q
     |||||||| ||||||||||||||| |   ||||||||||||||||||    
T  3387775 gtaatcaactttaatgtctataacc-cttgattgatcaacatttctca 3387821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16426366 - 16426411
Alignment:
Q  8 aagcataggacaccgacaccgctaaatatatattaatttatttata 53  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||    
T  16426366 aagcataggacactgacaccgctacctatatattaatttatttata 16426411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 125194 - 125245
Alignment:
Q  82 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatca 133  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||| ||||    
T  125194 atctaacttgagcaatttatttcattaaaaaaagttttaaaacaagaaatca 125245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 126453 - 126508
Alignment:
Q  288 ttcagatattcgtctcagttgtccgacacggctcgtataagtgttatataggtgtc 343  Q
    |||||||||| |||| || ||||| ||||||||||||| |||||||||| ||||||    
T  126453 ttcagatatttgtctaagctgtccaacacggctcgtatgagtgttatatgggtgtc 126508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 12818 - 13051
Alignment:
Q  14 aggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaataca----------tctaacttgagcaaattattt 103  Q
    |||||||||||||||||| ||||||||||||||||||| |||  |  ||||||||||||||||||||||          | |||||||||||| ||||||    
T  12818 aggacaccgacaccgctacatatatattaatttatttacagaaggc-ctaaaatgaaaatcaaaatacaaacataagaatttaacttgagcaatttattt 12916  T
Q  104 catcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtct 203  Q
    ||||  ||||||||  |||||||||| ||  || |||| ||||||||||||||||||| ||||||||||||||||||  || |||||||| ||||| |||    
T  12917 catcgaaaaaagttcgaaaacaagatgtcctagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaactttaatttct 13016  T
Q  204 ataacctcccaattgatcaacatttctcaaaacat 238  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  13017 ataacctcctaattgatcaacgtttctcaacacat 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 110 - 335
Target Start/End: Complemental strand, 70190 - 69964
Alignment:
Q  110 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaa-----aaaagctaaaaatgttataatcaacgttaatgtcta 204  Q
    |||||||| ||||||||||||||| || |||| ||||||||||||||||||| ||| ||     |||||||||||||||   ||||||| ||||| ||||    
T  70190 aaaaagttctaaaacaagatatcatagtatttgacatttatttattcatctaatataaagaaaaaaaagctaaaaatgt---aatcaactttaatttcta 70094  T
Q  205 taacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagatattcgtctca 304  Q
    |||||  | |||||||||||||||||||| |||||||||| ||||||||||| |   ||| ||| || |||||| ||||||||||  || |||  | | |    
T  70093 taaccctctaattgatcaacatttctcaacacatatgtaattcttgtatctacgttgtgtagaaccatgagaga-aaaaatgtttatgacatttatttga 69995  T
Q  305 gttgtccgacacggctcgtataagtgttata 335  Q
    ||||||||||||| ||| ||| |||||||||    
T  69994 gttgtccgacacgactcatatgagtgttata 69964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 288977 - 289103
Alignment:
Q  222 aacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaa-atgtttcagatattcgtctcagttgtccgacacggct 320  Q
    ||||||| |||| | |||| ||||| ||||||||| |   ||||||||||||||||| |||| |||||||||| |   |||||||||||| || | | ||    
T  288977 aacatttatcaacatatatttaacttttgtatctatgttgtgtggaagcaagagagagaaaaaatgtttcagaaaaatgtctcagttgtctgatatgtct 289076  T
Q  321 cgtataagtgttatataggtgtcggac 347  Q
    ||||| |||||||||||||||||||||    
T  289077 cgtatgagtgttatataggtgtcggac 289103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 557 - 404
Alignment:
Q  15 ggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat---------ctaacttgagcaaattatttca 105  Q
    |||||||||||||||||  |||||||||||||||||||| |  ||||| || | | |||||||||||||         ||||||||||||||||||||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaa-gatcttaattaagaatcaaaatacataatatgcatctaacttgagcaaattatttca 459  T
Q  106 tcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatct 160  Q
    | | ||||| || || |||||||||  | || |||| || ||||||||| |||||    
T  458 ttaaaaaaaattctataacaagatacaatagtatttgacctttatttatccatct 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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