View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_high_2 (Length: 593)
Name: NF9703_high_2
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 100 - 577
Target Start/End: Original strand, 8167033 - 8167513
Alignment:
| Q |
100 |
agtgtcctaaatcaagaacccttaaaaagaaaagcatacgaaaaattaaaaccttgaagaaattgatatccaccgacctatttgtagtgttattgtcgtt |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8167033 |
agtgtcctaaatcaagaaccctcaaaaagaaaagcatatgaaaaattaaaaccttgaagaaattgatatccaccgacctatttgtagtgttattgtcgtt |
8167132 |
T |
|
| Q |
200 |
catcataacaatcattcaagattgagtagttatatgaatatttttgccttgcaaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8167133 |
catcataacaatcattcaagattgagtagttatatgaatatttttgccttgcaaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaat |
8167232 |
T |
|
| Q |
300 |
tgctcaagagattccaaagccatatcatcaatagaatgaccccaccagcaagaaaaacatgaactactcttgtttctctcttttattccttctaaataat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8167233 |
tgctcaagagattccaaagccatatcatcaatagaatgaccccaccagcaagaaaaacatgaactactcttgtttctctcttttacaccttctaaataat |
8167332 |
T |
|
| Q |
400 |
tattctcttcttccagccgttcttcaattgcctcatgttgaaaccttaaggtttcaactacgccctc---atcttgcttccttttgtcagtgtcgatgac |
496 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
8167333 |
tattctcttctttcagccgttcttcaattgcctcatgttgaaaccttaaggtttcaactacgccctcatgatcctgcttccttttgtcagcgtcgatgac |
8167432 |
T |
|
| Q |
497 |
tgggttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtga |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8167433 |
tgggttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagttttccgtttggtga |
8167513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 246 - 547
Target Start/End: Original strand, 50707249 - 50707550
Alignment:
| Q |
246 |
ccttgcaaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaattgctcaagagattccaaagccatatcatcaatagaatgaccccacc |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50707249 |
ccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtcttaaattgcttaagagattccaaagccatatcatcaatagaatgatcccacc |
50707348 |
T |
|
| Q |
346 |
agcaagaaaaacatgaactactcttgtttctctcttttattccttctaaataattattctcttcttccagccgttcttcaattgcctcatgttgaaacct |
445 |
Q |
| |
|
| ||| || ||||||||||| |||||| ||||||||| ||| ||||| ||| |||||||||| ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
50707349 |
aagaaggaaggcatgaactactgttgtttgtctcttttacagcttgtaaattattcttctcttctttcagccgttcttgaattgtctcatgttgaagcct |
50707448 |
T |
|
| Q |
446 |
taaggtttcaactacgccctcatcttgcttccttttgtcagtgtcgatgactgggttttccctatcgagaaagtgtttaatgacggtgttagggttaggg |
545 |
Q |
| |
|
| ||||||||| | | |||||||||||||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||||| |||| | |||||||| |
|
|
| T |
50707449 |
tgaggtttcaattgtgtactcatcttgcttccctttttcagtgttgatgactgggttttccttatcgaaaaagtgtttaatgacagtgtcatggttaggg |
50707548 |
T |
|
| Q |
546 |
ta |
547 |
Q |
| |
|
|| |
|
|
| T |
50707549 |
ta |
50707550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University