View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_high_22 (Length: 316)

Name: NF9703_high_22
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_high_22
NF9703_high_22
[»] chr4 (8 HSPs)
chr4 (135-304)||(24056783-24056952)
chr4 (125-169)||(22905032-22905076)
chr4 (125-169)||(22956700-22956744)
chr4 (125-169)||(43441788-43441832)
chr4 (126-169)||(44645346-44645389)
chr4 (227-287)||(26728379-26728439)
chr4 (97-173)||(26728493-26728569)
chr4 (111-183)||(34821674-34821746)
[»] chr8 (2 HSPs)
chr8 (117-175)||(4903479-4903537)
chr8 (118-171)||(3961182-3961235)
[»] chr7 (1 HSPs)
chr7 (117-157)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 135 - 304
Target Start/End: Original strand, 24056783 - 24056952
Alignment:
Q  135 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccctccaac 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  24056783 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccctccaac 24056882  T
Q  235 ttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccaccaccatacatcctcacctt 304  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24056883 ttcttgtacatagagttcaccgagaaccaaccgttctcttccaatccccaccaccatacatcctcacctt 24056952  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
Q  125 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 169  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22905032 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
Q  125 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 169  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22956700 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
Q  125 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 169  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  43441788 tccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
Q  126 ccaagaaaaagccaccactttggacggagctgaactcttccaaa 169  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  44645389 ccaagaaaaagccaccaccttggatggagccgaactcttccaaa 44645346  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 26728439 - 26728379
Alignment:
Q  227 cctccaacttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccacca 287  Q
    |||||||||||||||||||||| |||||||  || | ||| ||| ||||||||| ||||||    
T  26728439 cctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccacca 26728379  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 26728569 - 26728493
Alignment:
Q  97 ttcgtcgggatccaatcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatg 173  Q
    |||||||| |||||||||| ||| | ||||||||| ||  | |||||||| |||||||| | ||| |||||||||||    
T  26728569 ttcgtcggtatccaatcatgaagcaatttccaagagaattctaccactttagacggagccggacttttccaaatatg 26728493  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 34821674 - 34821746
Alignment:
Q  111 atcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcgtaaacacc 183  Q
    ||||| |||||||||||||| |||  | |||||||| || ||||| |||||||||| ||| |||| |||||||    
T  34821674 atcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaacacc 34821746  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 4903537 - 4903479
Alignment:
Q  117 aagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg 175  Q
    |||||||||||||| |||| |||||||||| ||||| || |  ||||||||||||||||    
T  4903537 aagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg 4903479  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
Q  118 agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata 171  Q
    ||||||||||||||||||||||| || || || |||||||| || |||||||||    
T  3961182 agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata 3961235  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 32016722 - 32016682
Alignment:
Q  117 aagaagtttccaagaaaaagccaccactttggacggagctg 157  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  32016722 aagaagtttccaagaaaaagccacaacttttgacggggctg 32016682  T

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