View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_23 (Length: 313)
Name: NF9703_high_23
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37154680 - 37154387
Alignment:
| Q |
1 |
aaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttgtcaaaggccaacaattgatgagtgagattgagttagaacatatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154680 |
aaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttttcaaaggccaacaattgatgagtgagattgagttagaacatatgaa |
37154581 |
T |
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| Q |
101 |
acgtataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtcc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154580 |
acatataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtcc |
37154481 |
T |
|
| Q |
201 |
aaagtccaatgataacagctgaatttccaacaaccataatggcaaatgcaattggacctatcaatgcacctgccaaatgaatcaccttataatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154480 |
aaagtccaatgataacagctgaatttccaacaaccataatggcaaatgcaattggacctatcaatgcacctgccaaatgaatcaccttataatg |
37154387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37200035 - 37199742
Alignment:
| Q |
1 |
aaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttgtcaaaggccaacaattgatgagtgagattgagttagaacatatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37200035 |
aaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttttcaaaggccaacaattgatgagtgagattgagttagaacatatgaa |
37199936 |
T |
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| Q |
101 |
acgtataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtcc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199935 |
acatataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtcc |
37199836 |
T |
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| Q |
201 |
aaagtccaatgataacagctgaatttccaacaaccataatggcaaatgcaattggacctatcaatgcacctgccaaatgaatcaccttataatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199835 |
aaagtccaatgataacagctgaatttccaacaaccataatggcaaatgcaattggacctatcaatgcacctgccaaatgaatcaccttataatg |
37199742 |
T |
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