View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_high_3 (Length: 507)

Name: NF9703_high_3
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_high_3
NF9703_high_3
[»] chr3 (12 HSPs)
chr3 (1-488)||(39559235-39559722)
chr3 (321-477)||(50815338-50815494)
chr3 (321-477)||(50860370-50860526)
chr3 (13-136)||(50814856-50814979)
chr3 (13-136)||(50860885-50861008)
chr3 (341-482)||(49856573-49856714)
chr3 (342-467)||(49867974-49868099)
chr3 (411-482)||(49971699-49971770)
chr3 (315-482)||(49973028-49973195)
chr3 (414-484)||(49979321-49979391)
chr3 (219-283)||(49868244-49868308)
chr3 (153-201)||(49856951-49856999)
[»] scaffold0543 (2 HSPs)
scaffold0543 (342-488)||(2084-2230)
scaffold0543 (252-280)||(2380-2408)
[»] scaffold0492 (2 HSPs)
scaffold0492 (342-488)||(3630-3776)
scaffold0492 (252-280)||(3926-3954)
[»] chr7 (2 HSPs)
chr7 (347-483)||(19369908-19370044)
chr7 (407-468)||(19929351-19929412)


Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 39559235 - 39559722
Alignment:
Q  1 ccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggttccatcgagtttgat 100  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39559235 ccttacggcactttgtaaggttattcgtacagctagagaggttctaaacctatccaatttggtcagagctaacatttccaaaggttccatcgagtttgat 39559334  T
Q  101 tggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatctggagcttatattagact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559335 tggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatctggagcttatattagact 39559434  T
Q  201 tctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattcatgatgatgatgatatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559435 tctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattcatgatgatgatgatatagt 39559534  T
Q  301 aaacagtagtgatgatgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559535 aaacagtagtgatgatgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgc 39559634  T
Q  401 attaactgtgagtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttag 488  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559635 attaactgtgagtttcaatttgctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttag 39559722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 321 - 477
Target Start/End: Original strand, 50815338 - 50815494
Alignment:
Q  321 aagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatt 420  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  50815338 aagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatt 50815437  T
Q  421 ttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgc 477  Q
    | |||| ||||| || | ||||||||||||| |||| ||||||| ||||||||||||    
T  50815438 tgctaactatatcatccggaattcaagagtactaagcaccatgataattcagagtgc 50815494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 321 - 477
Target Start/End: Complemental strand, 50860526 - 50860370
Alignment:
Q  321 aagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatt 420  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  50860526 aagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatt 50860427  T
Q  421 ttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgc 477  Q
    | |||| ||||| || | ||||||||||||| |||| ||||||| ||||||||||||    
T  50860426 tgctaactatatcatccggaattcaagagtactaagcaccatgataattcagagtgc 50860370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 50814856 - 50814979
Alignment:
Q  13 ttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggttccatcgagtttgattggctttataac 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||   | |||||||||||||||||||||    
T  50814856 ttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggtttacttgagtttgattggctttataac 50814955  T
Q  113 gtgagccatctccgcatacgagag 136  Q
    ||||  | ||||||||||| ||||    
T  50814956 gtgaatcttctccgcatacaagag 50814979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 50861008 - 50860885
Alignment:
Q  13 ttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggttccatcgagtttgattggctttataac 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||   | |||||||||||||||||||||    
T  50861008 ttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggtttacttgagtttgattggctttataac 50860909  T
Q  113 gtgagccatctccgcatacgagag 136  Q
    ||||  | ||||||||||| ||||    
T  50860908 gtgaatcttctccgcatacaagag 50860885  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 341 - 482
Target Start/End: Complemental strand, 49856714 - 49856573
Alignment:
Q  341 attgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcaga 440  Q
    ||||| ||||||||||| ||||||||||| | ||||||||| |||| || |||||||||||| || || ||| |||||||| | |||||||| |||||||    
T  49856714 attgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcaga 49856615  T
Q  441 attcaagagtattaaggaccatgacaattcagagtgccaaat 482  Q
    ||||||||||| |||| | ||||| |||||||||||||||||    
T  49856614 attcaagagtactaagcatcatgaaaattcagagtgccaaat 49856573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 467
Target Start/End: Complemental strand, 49868099 - 49867974
Alignment:
Q  342 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 441  Q
    |||||||||||||||| | ||||||||| | ||| ||||| |||| |||||| |||||||| || |||||||||| |||| | |||||||||||||||||    
T  49868099 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 49868000  T
Q  442 ttcaagagtattaaggaccatgacaa 467  Q
    |||| ||||| | |||||||||||||    
T  49867999 ttcaggagtactgaggaccatgacaa 49867974  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 49971770 - 49971699
Alignment:
Q  411 agtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaat 482  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||| || |||||||||||| |||||||||    
T  49971770 agtttcaatttgcaaaatatataatgcagaattcaagagcattaagcacaatgacaattcagtgtgccaaat 49971699  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 482
Target Start/End: Complemental strand, 49973195 - 49973028
Alignment:
Q  315 atgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtt 414  Q
    ||||| ||||||||||||| | |   ||||||||| ||||||| |||||  ||||   ||||||||| |||| ||||||| |  |||| |  |||||| |    
T  49973195 atgacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagct 49973096  T
Q  415 tcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaat 482  Q
    ||| ||| | |||||||| ||| |||||||||||||| | ||  |||||| |||||||||||||||||    
T  49973095 tcactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaat 49973028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 484
Target Start/End: Complemental strand, 49979391 - 49979321
Alignment:
Q  414 ttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatcc 484  Q
    |||||||| |||| ||||| ||||| |||| ||||||| |||| ||||||||||||||| |||||||||||    
T  49979391 ttcaatttgctaactatatcatgcataattgaagagtactaagaaccatgacaattcagggtgccaaatcc 49979321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 49868308 - 49868244
Alignment:
Q  219 tcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattcat 283  Q
    ||||||||||||||||||| ||||   || || ||||||| ||||||||||||||||||||||||    
T  49868308 tcaagtggaactggctgattgaactgcttgaaaatttccctaaacttcaaactcttatcattcat 49868244  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 49856999 - 49856951
Alignment:
Q  153 tacatggcatgtttcacaatttaacccatctggagcttatattagactt 201  Q
    ||||| || ||||||||||||||||||| |||||||||| ||| |||||    
T  49856999 tacatagcgtgtttcacaatttaacccacctggagcttagattggactt 49856951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 488
Target Start/End: Complemental strand, 2230 - 2084
Alignment:
Q  342 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 441  Q
    ||||||||  ||| || ||||||||||| | ||||||||| |||| |||||| || ||||| || |||||| ||| |||| | | |||||| ||||||||    
T  2230 ttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaa 2131  T
Q  442 ttcaagagtattaaggaccatgacaattcagagtgccaaatccttag 488  Q
    ||||||| ||||| | ||||||||||||||||||||| ||| |||||    
T  2130 ttcaagaatattacgcaccatgacaattcagagtgccgaattcttag 2084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 2408 - 2380
Alignment:
Q  252 atttccccaaacttcaaactcttatcatt 280  Q
    |||||||||||||||||||||||||||||    
T  2408 atttccccaaacttcaaactcttatcatt 2380  T

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Target: scaffold0492 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 488
Target Start/End: Complemental strand, 3776 - 3630
Alignment:
Q  342 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 441  Q
    ||||||||  ||| || ||||||||||| | ||||||||| |||| |||||| || ||||| || |||||| ||| |||| | | |||||| ||||||||    
T  3776 ttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaa 3677  T
Q  442 ttcaagagtattaaggaccatgacaattcagagtgccaaatccttag 488  Q
    ||||||| ||||| | ||||||||||||||||||||| ||| |||||    
T  3676 ttcaagaatattacgcaccatgacaattcagagtgccgaattcttag 3630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 3954 - 3926
Alignment:
Q  252 atttccccaaacttcaaactcttatcatt 280  Q
    |||||||||||||||||||||||||||||    
T  3954 atttccccaaacttcaaactcttatcatt 3926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 483
Target Start/End: Complemental strand, 19370044 - 19369908
Alignment:
Q  347 ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaattcaa 446  Q
    |||| |||||| ||||||||||||| ||||||||| |||| ||||||  ||||| | ||||||||| |||||||| | ||||||||  || |||| ||||    
T  19370044 ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaa 19369945  T
Q  447 gagtattaaggaccatgacaattcagagtgccaaatc 483  Q
     |||| |||  |||||||||||||||| |||| ||||    
T  19369944 cagtactaaacaccatgacaattcagattgccgaatc 19369908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 19929351 - 19929412
Alignment:
Q  407 tgtgagtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaat 468  Q
    |||||| |||||||| | |||||||| ||||||||||||| |||||| | ||||||| ||||    
T  19929351 tgtgagcttcaatttgcaaaatatattatgcagaattcaaaagtattgaagaccatgtcaat 19929412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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