View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_36 (Length: 243)
Name: NF9703_high_36
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_36 |
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| [»] scaffold0171 (3 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 10865 - 10640
Alignment:
| Q |
1 |
ctgcaagttctgaaaaatcatgaaccatgttcctaaggtcttcaacattactatcattttcattaaaagttttactcatggtcatccttgttatgattct |
100 |
Q |
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| T |
10865 |
ctgcaagttctgaaaaatcatgaaccatgttcctaaggtcttcaacattactatcattttcattaaaagttttactcatggtcatccttgttatgattct |
10766 |
T |
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| Q |
101 |
attcgtgagattcaagagcaagccactgacatcaacagcttcgccggcttcccctttcttctgcagaagtctaagaaacagcacggtctcttgttgcctc |
200 |
Q |
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| T |
10765 |
attcgtgagattcaagagcaagccactgacatcaacagcttcgccggcttcccctttcttctgcagaagtctaagaaaccgcacggtctcttgttgcctc |
10666 |
T |
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| Q |
201 |
aacggacggaattgatcaatagttct |
226 |
Q |
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| T |
10665 |
aacggacggaattgatcaatagttct |
10640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 18983 - 18828
Alignment:
| Q |
24 |
accatgttcctaaggtcttcaacattactatcattttcattaaaagttttactcatggtcatccttgttatgattctattcgtgagattcaagagcaagc |
123 |
Q |
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| T |
18983 |
accatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccatagttgtgatgattctattcgtgagattcaagagctcgc |
18884 |
T |
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| Q |
124 |
cactgacatcaacagcttcgccggcttcccctttcttctgcagaagtctaagaaac |
179 |
Q |
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| T |
18883 |
cgccaacattaacagcctcgcgagcttccccttttgtctgcaaaagtctaagaaac |
18828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 24230 - 24190
Alignment:
| Q |
186 |
gtctcttgttgcctcaacggacggaattgatcaatagttct |
226 |
Q |
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| T |
24230 |
gtctcttgttgcctcaatggacgaaattgatcaagagttct |
24190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 38808845 - 38808925
Alignment:
| Q |
39 |
tcttcaacattactatcattttcattaaaagttttactcatggtcatccttgttatgattctattcgtgagattcaagagc |
119 |
Q |
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| T |
38808845 |
tcttcaacatcaccatcattttcacaacaagttttactcattgtcatccttgttatgattctattggtgtgaatcaagagc |
38808925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 25168446 - 25168365
Alignment:
| Q |
138 |
gcttcgccggcttcccctttcttctgcagaagtctaagaaacagcacggtctcttgttgcctcaacggacggaattgatcaa |
219 |
Q |
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| T |
25168446 |
gcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggacggagttgatcaa |
25168365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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