View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_4 (Length: 469)
Name: NF9703_high_4
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 29399239 - 29398790
Alignment:
| Q |
1 |
aaactaacatcatagatcaaagctgagagaggtgatgacgatgatggtgaagatgatagttttgttagaattgaaggtaaaaggcgatgaagtgattgac |
100 |
Q |
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| T |
29399239 |
aaactaacatcatagatcaaagctgagagaggtgatgacgatgatggtgaagatgatagttttgttagaattgaaggtaaaaggcgatgaagtgattgac |
29399140 |
T |
|
| Q |
101 |
gaatggtttcgaactgaagccaaaatggatcgacggtgttaacgttaatcgatggatctaaagggatgaggtttaagtctatttgagtgagttgagatga |
200 |
Q |
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| T |
29399139 |
gaatggtttcgaactgaagccaaaatggatcgacggtgttaacgttaatcgatggatctaaagggatgaggtttaagtctatttgagtgagttgagatga |
29399040 |
T |
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| Q |
201 |
ggggaaagaagaacaaaactgagtgatgaggtctgattcagctaaagagattgttggttttggtgtgatgagagtgattttgcagccataacgaagaaat |
300 |
Q |
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| T |
29399039 |
ggggaaagaagaacaaaactgagtgatgaggtctgattcagctaaagagattgttggttttggtgtgatgagagtgattttgcagccataacgaagaaat |
29398940 |
T |
|
| Q |
301 |
aactcagctgttcttagacatggattgagatgacctagaccagaacttggaaggaaagctacatgagcaacaaaggattcatctgaagaagacattgtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29398939 |
aactcagctgttcttagacatggattgagatgacctagaccagaacttggaaggaaagctacatgagcaacaaaggattcatctgaagaagacattgtta |
29398840 |
T |
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| Q |
401 |
gttttgctatgtggagaagaaacaagggaagtctagctagtgtggatgat |
450 |
Q |
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| T |
29398839 |
gttttgctatgtggagaagaaacaagggaagtctagctagtgtggatgat |
29398790 |
T |
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