View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_high_40 (Length: 240)

Name: NF9703_high_40
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_high_40
NF9703_high_40
[»] chr6 (3 HSPs)
chr6 (114-224)||(30434894-30435013)
chr6 (152-222)||(30419635-30419705)
chr6 (1-42)||(30434779-30434820)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 30434894 - 30435013
Alignment:
Q  114 tttataggaataaatttatgtgattgcatatttgtact---------aacaaaatatatttataccttcttatatattcatctatattctatcaaagtaa 204  Q
    |||||||||||||||| |||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30434894 tttataggaataaattcatgtgattgcatatttgtacttttgtagagaacaaaataaatttataccttcttatatattcatctatattctatcaaagtaa 30434993  T
Q  205 agattagttttgtagaaaat 224  Q
    ||||||||||||||||||||    
T  30434994 agattagttttgtagaaaat 30435013  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 30419635 - 30419705
Alignment:
Q  152 aacaaaatatatttataccttcttatatattcatctatattctatcaaagtaaagattagttttgtagaaa 222  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||    
T  30419635 aacaaaatatatttaaaccttcttatataatcatctatattctatcaaagtaaattttagtttagtagaaa 30419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30434779 - 30434820
Alignment:
Q  1 tgtacttttttgtacttatctccttttctaataatatttttt 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  30434779 tgtacttttttgtacttctctccttttctaataatatttttt 30434820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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