View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_44 (Length: 227)
Name: NF9703_high_44
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_44 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 7534933 - 7534794
Alignment:
| Q |
88 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
187 |
Q |
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| T |
7534933 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
7534834 |
T |
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| Q |
188 |
tgtagtatgttgggagatattagtgagggaatgctccact |
227 |
Q |
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| T |
7534833 |
tgtagtatgttgggagatattagtgagggaatgctccact |
7534794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 7449395 - 7449256
Alignment:
| Q |
88 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
187 |
Q |
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| T |
7449395 |
caagaatggttttgcagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
7449296 |
T |
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| Q |
188 |
tgtagtatgttgggagatattagtgagggaatgctccact |
227 |
Q |
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| T |
7449295 |
tgtagtatgttgggagatattagtgagggaatgctgcact |
7449256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7449505 - 7449417
Alignment:
| Q |
1 |
gtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
89 |
Q |
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| T |
7449505 |
gtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
7449417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7535043 - 7534955
Alignment:
| Q |
1 |
gtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
89 |
Q |
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| T |
7535043 |
gtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
7534955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 18664383 - 18664245
Alignment:
| Q |
89 |
aagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgcat |
188 |
Q |
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| T |
18664383 |
aagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcat |
18664284 |
T |
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| Q |
189 |
gtagtatgttgggagatattagtgagggaatgctccact |
227 |
Q |
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|||||||||||||||||||| |||||||||||| |||| |
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| T |
18664283 |
gtagtatgttgggagatattgttgagggaatgctgcact |
18664245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 18664493 - 18664411
Alignment:
| Q |
2 |
tattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactact |
84 |
Q |
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| T |
18664493 |
tattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactact |
18664411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 18664793 - 18664740
Alignment:
| Q |
2 |
tattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttca |
55 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||||| || ||||||||| |
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| T |
18664793 |
tattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttca |
18664740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 15079445 - 15079583
Alignment:
| Q |
89 |
aagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgcat |
188 |
Q |
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| T |
15079445 |
aagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcat |
15079544 |
T |
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| Q |
189 |
gtagtatgttgggagatattagtgagggaatgctccact |
227 |
Q |
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| T |
15079545 |
gtagtatgttgggagatattgttgagggaatgctgcact |
15079583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 15079335 - 15079417
Alignment:
| Q |
2 |
tattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactact |
84 |
Q |
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| T |
15079335 |
tattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgaatgaacgcgatttgactact |
15079417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 15079035 - 15079088
Alignment:
| Q |
2 |
tattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttca |
55 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||||| || ||||||||| |
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| T |
15079035 |
tattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttca |
15079088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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