View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_5 (Length: 448)
Name: NF9703_high_5
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 35219274 - 35219691
Alignment:
| Q |
17 |
cacagaagttgaaaccaattatctcaggcaaagaagtggaagaattcacactagaaaaagaagtaaccgatgcgaaaaaggtgagtcatcgtactcatag |
116 |
Q |
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| T |
35219274 |
cacagaagttgaaaccaattatctcaggcaaagaagtggaagaattcacactagaaaaagaagtaaccgatacgaaaaaggtgagtcatcgtactcatag |
35219373 |
T |
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| Q |
117 |
aacgaggctaaggaaaggaagaaaaactgctagaagtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35219374 |
aacgaggctaaggaaaggaagaaaaactgctagaagtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgag |
35219473 |
T |
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| Q |
217 |
gaagataaagattcaggattggtttctttgataccagggttgagcaaaaaccaacacaatgttgatgaaagtgtgattagtaggccttatttatctgagg |
316 |
Q |
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| T |
35219474 |
gaagataaagattcaggattggtttctttgataccagggttgagcaaaaaccaacacaatgttgatgaaagtgtgattagtaggccttatttatctgagg |
35219573 |
T |
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| Q |
317 |
cttggggtgttataaagcaaaagaaagttgttaatccattgcttaattggagggtaccaactcttggcaatgagattgatatgaaggataatcttaagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35219574 |
cttggggtgttataaagcaaaagaaagttgttaatccattgcttaattggagggtaccaactcttggcaatgagattgatatgaaggataatcttaagtt |
35219673 |
T |
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| Q |
417 |
ttgggctcacacagttgc |
434 |
Q |
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| T |
35219674 |
ttgggctcacacagttgc |
35219691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 5183533 - 5183457
Alignment:
| Q |
151 |
agtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgaggaagataaaga |
227 |
Q |
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| T |
5183533 |
agtttatcagaccttgagtttgaggaggtaaaagggttcatggatcttggttttgttttctcagaggaagataaaga |
5183457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 31166631 - 31166731
Alignment:
| Q |
151 |
agtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgaggaagataaagattcaggattggtttctttgatac |
250 |
Q |
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| T |
31166631 |
agtttatcagagcttgagtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagataaagattcaaaattggtttcattgatac |
31166730 |
T |
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| Q |
251 |
c |
251 |
Q |
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| T |
31166731 |
c |
31166731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 35968885 - 35968796
Alignment:
| Q |
151 |
agtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgaggaagataaagattcaggattggtt |
240 |
Q |
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|||||||| || ||||| ||| ||||||||||||| ||||||||| | |||||||| || || |||||||||||||||||| | |||||| |
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| T |
35968885 |
agtttatctgaccttgaatttgaggagctaaaaggttttatggatctgggttttgttttctcagaggaagataaagattcaagcttggtt |
35968796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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