View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_high_7 (Length: 443)
Name: NF9703_high_7
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31828462 - 31828224
Alignment:
| Q |
1 |
tattaatatagatgtcaaagctatgccaagcataattgaggatcctgcnnnnnnn-ttatagattagtataaaataggtagtagaagacatcaaagaagg |
99 |
Q |
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| T |
31828462 |
tattagtatagatgtcaaagctatgccaagcataattgaggatcctgcaaaaaaaattatagattagtataaaataggtagtagaagacatcaaagaagg |
31828363 |
T |
|
| Q |
100 |
gaagcctgaaaaagaaatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaattctttacctgaaaataaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31828362 |
gaagcctgaaaaagaaatcttacccacataatcagcataggcacttatatcttcctcactttttgcaatattattaaaatcctttacctgaaaataaata |
31828263 |
T |
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| Q |
200 |
tttcatatatgttttatttgaagttgttcaaatacttat |
238 |
Q |
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| T |
31828262 |
tttcatatatgttttatttgaagttgttcaaatacttat |
31828224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 32116879 - 32116667
Alignment:
| Q |
18 |
aagctatgccaagcataattgaggatcctgcnnnnnnn--ttatagattagtataaaataggtagtagaagacatcaaagaagggaagcctgaaaaagaa |
115 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32116879 |
aagctatgccaagcatgattgaggatcctgctaaaaaaaattatagattagtataaaataggtagtagaagacatcaaagaagggaagcatgaaaaagaa |
32116780 |
T |
|
| Q |
116 |
atcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaattctttacctgaaaataaatatttcatatatgtttta |
215 |
Q |
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| T |
32116779 |
atcttacccagataatcagcataggcacttatatcttcctcactttttgcaa---aattaaaatcctttacttgaaattaaatatttcatataagtttta |
32116683 |
T |
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| Q |
216 |
tttgaagttgttcaaa |
231 |
Q |
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| | ||||||| |||| |
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| T |
32116682 |
tcttaagttgtacaaa |
32116667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 31830169 - 31830136
Alignment:
| Q |
282 |
agtctctccaatgtcatgtgcttcttttaagggc |
315 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
31830169 |
agtctctccaatgccatgtgcttcttttaagggc |
31830136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 39160665 - 39160548
Alignment:
| Q |
79 |
agtagaagacatcaaagaagggaagcctgaaaaagaaatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaa |
178 |
Q |
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||||||||||||||||||| |||| ||||||| ||||||||||| |||||| || |||| || |||||||||||||| |||| ||||| |||| ||| |
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| T |
39160665 |
agtagaagacatcaaagaattgaagtctgaaaa-gaaatcttacctacataaccagcataagcgcttatatcttcctcgctttctgcaa---tattgaaa |
39160570 |
T |
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| Q |
179 |
ttctttacctgaaaataaatat |
200 |
Q |
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| || ||||||||||||||||| |
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| T |
39160569 |
tcctctacctgaaaataaatat |
39160548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 2606003 - 2605947
Alignment:
| Q |
115 |
aatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatatt |
171 |
Q |
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|||||||||||||||| | |||| |||||||| || ||||| |||||||||||||| |
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| T |
2606003 |
aatcttacccacataacctgcataagcacttatgtcctcctctctttttgcaatatt |
2605947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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