View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_1 (Length: 990)
Name: NF9703_low_1
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 913; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 12 - 976
Target Start/End: Original strand, 46809574 - 46810538
Alignment:
| Q |
12 |
agcaaaggagaggtcgtaaagggagacaacagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809574 |
agcaaaggagaggtcgtaaagggagacaacagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaa |
46809673 |
T |
|
| Q |
112 |
atcaagctcaaagagaagcatatcctctgagtctggacccttcaacttgagaagccgcaaccccctctattccaacaagtttggcaagttctttgagatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809674 |
atcaagctcaaagagaagcatatcctctgagtctggacccttcaacttgagaaaccgcaaccccctctattccaacaagtttggcaagttctttgagatt |
46809773 |
T |
|
| Q |
212 |
accccagagaaaaatccacaacttcaagatttggatatatttgtcagttctgtggagatcaatgaggtaataacatatataaacaacaaaattcgacagc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809774 |
accccagagaaaaatccacaacttcaagatttggatatatttgtcagttctgtggagatcaatgaggtaataacatatataaacaacaaaattcgacagc |
46809873 |
T |
|
| Q |
312 |
tctagtagaggactaatcatgcttggaaaacctgagttcgttttttaaattgaacagtttttggtcaaacattgcttacattttaattgaactctgaatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809874 |
tctagtagaggactaatcatgcttggaaaacctgagttcgttttttaaattgaaaagtttttggtcaaacattgcttacattttaattgaactctgaatt |
46809973 |
T |
|
| Q |
412 |
atcgagaccctaattttcnnnnnnnnatctaattatgtaaacaaatttctgttgaaaatttagggcgctttgattctgccacactacaattctaggtcga |
511 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46809974 |
atcgagaccctaattttcttttttttatctaattatgtaaacaaatttctgttgaaaatttagggcgctttgattctgccacactacaattctaggtcca |
46810073 |
T |
|
| Q |
512 |
ctgtattattggtgattaatgaaggaaagggacaccttgaacttgtgggtcacaaaagtgagcaacaagagcaacgagagcaggatgaaaaagagttgag |
611 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46810074 |
ctgtagtattggtgatgaatgaaggaaagggacaccttgaacttgtgggtcacaaaagtgagcaacaagagcaacgagagcaggatgaaaaagagttgag |
46810173 |
T |
|
| Q |
612 |
aaaccctgaagtgcagaggtacaacgctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcaaatctc |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46810174 |
aaaccctgaagtgcagaggtacaacgctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctc |
46810273 |
T |
|
| Q |
712 |
aatttccttggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatactatgtaacataactaaatttaaatattgattgattatgt |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46810274 |
aatttccttggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatactatgtaacataactaaatttaaatattgattgattatgt |
46810373 |
T |
|
| Q |
812 |
tatgcttagttgaatatatagaaaatatttaactatggtacttttttatttggtgaatgaaattttaaaggtgaggatgacaatgtgataagtcaaatag |
911 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46810374 |
tatgcttagttgaagatatagaaaatatttaactatggtacttttttatttggtgaatgaaattttaaaggtgaggatgacaatgtgataagtcaaatag |
46810473 |
T |
|
| Q |
912 |
aaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaac |
976 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46810474 |
aaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaac |
46810538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 30298745 - 30298941
Alignment:
| Q |
56 |
aatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctcaaagagaagcatatcctctgagtctggacccttca |
155 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| |||| |||||||| ||||| ||||| | || || |||||| || |||| ||| |||| |
|
|
| T |
30298745 |
aatgtaatagtcaaagtatcaagagaacagattgaggaattgagcagacatgcaaaatctagctccagaaggagtggatcctccgaatctgcaccattca |
30298844 |
T |
|
| Q |
156 |
acttgagaagccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatccacaacttcaagatttggatatatt |
252 |
Q |
| |
|
|||||||||||||| | || ||||||||||| |||||||||| ||||||||||| || || |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
30298845 |
acttgagaagccgcgaacctatctattccaacgagtttggcaacttctttgagatcactccggagaaaaatccacaacttaaagacttggatatatt |
30298941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 41 - 257
Target Start/End: Original strand, 30303933 - 30304152
Alignment:
| Q |
41 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctcaaagagaagcat---atcct |
137 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| ||||| ||||||||||||||| |||| |||||||||||||| ||||| | || || | ||||| |
|
|
| T |
30303933 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagggaacagattgaggaattgagcagacatgccaaatctagctctagtaggaggagtgcatcct |
30304032 |
T |
|
| Q |
138 |
ctgagtctggacccttcaacttgagaagccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatccacaacttca |
237 |
Q |
| |
|
| || |||| ||| |||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||| || || |||||||||| ||||||||| |
|
|
| T |
30304033 |
ccgaatctgcaccattcaacttgagaagtcgcaaacctatctattccaacgagtttggcaacttctttgagatcactccggagaaaaatcaacaacttca |
30304132 |
T |
|
| Q |
238 |
agatttggatatatttgtca |
257 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
30304133 |
agacttggatatattagtca |
30304152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 41 - 270
Target Start/End: Original strand, 30286268 - 30286497
Alignment:
| Q |
41 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctcaaagagaagcatatcctctg |
140 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| ||||||||||||||||| |||||||| | | ||||||| || ||||| | || || ||| |||| |
|
|
| T |
30286268 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttctg |
30286367 |
T |
|
| Q |
141 |
agtctggacccttcaacttgagaagccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatccacaacttcaaga |
240 |
Q |
| |
|
| |||| ||| |||||||||||| || || || |||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
30286368 |
aatctgaaccaatcaacttgagaaaccagaaacctatctactccaacaagtttggcaatttctttgagatcaccccagagaaaaatccacagcttaaaga |
30286467 |
T |
|
| Q |
241 |
tttggatatatttgtcagttctgtggagat |
270 |
Q |
| |
|
||||||||||| |||| || || |||||| |
|
|
| T |
30286468 |
cttggatatattggtcaattatgcggagat |
30286497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 30291401 - 30291520
Alignment:
| Q |
133 |
atcctctgagtctggacccttcaacttgagaagccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatccacaa |
232 |
Q |
| |
|
|||||| || |||| ||| ||||||||||||||||| | || ||||||||||| |||||||||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
30291401 |
atcctccgaatctgcaccattcaacttgagaagccgtgaacctatctattccaacgagtttggcaacttctttgagatcactccggagaaaaatccacaa |
30291500 |
T |
|
| Q |
233 |
cttcaagatttggatatatt |
252 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
30291501 |
cttcaagacttggatatatt |
30291520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 30314941 - 30315060
Alignment:
| Q |
133 |
atcctctgagtctggacccttcaacttgagaagccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatccacaa |
232 |
Q |
| |
|
|||||| || |||| ||| |||||||||||||||| | || ||||||||||| |||||||||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
30314941 |
atcctccgaatctgcaccattcaacttgagaagccatgaacctatctattccaacgagtttggcaacttctttgagatcactccggagaaaaatccacaa |
30315040 |
T |
|
| Q |
233 |
cttcaagatttggatatatt |
252 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
30315041 |
cttcaagacttggatatatt |
30315060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 30291279 - 30291358
Alignment:
| Q |
41 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctc |
120 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
30291279 |
cagagccaggaagcaaatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctc |
30291358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 30287116 - 30287212
Alignment:
| Q |
879 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaa |
975 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| || ||| ||||||| |
|
|
| T |
30287116 |
aaggtgaggaggacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30287212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 30299992 - 30300088
Alignment:
| Q |
879 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaa |
975 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| || ||| ||||||| |
|
|
| T |
30299992 |
aaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30300088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 30315650 - 30315746
Alignment:
| Q |
879 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaa |
975 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| || ||| ||||||| |
|
|
| T |
30315650 |
aaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30315746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 30314819 - 30314898
Alignment:
| Q |
41 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctc |
120 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
30314819 |
cagagccaggaagcagatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctc |
30314898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 637 - 771
Target Start/End: Original strand, 30315361 - 30315495
Alignment:
| Q |
637 |
gctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcaaatctcaatttccttggctttggtatcaatg |
736 |
Q |
| |
|
|||||| |||||||||| || ||| | ||||||| |||||||| ||| | | | |||| |||||||| ||||| ||| ||||| ||||||||||||| |
|
|
| T |
30315361 |
gctaggttgtctccaggtgatgtttatgtaattcccgcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatg |
30315460 |
T |
|
| Q |
737 |
ctgagaacaatcagagaaactttcttgcaggtata |
771 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
30315461 |
ctgagaacaatcagaggaacttccttgctggtata |
30315495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 637 - 773
Target Start/End: Original strand, 30286780 - 30286916
Alignment:
| Q |
637 |
gctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcaaatctcaatttccttggctttggtatcaatg |
736 |
Q |
| |
|
|||||| |||||||||| || ||| | |||||||||||||||| ||| | | | ||| |||||| || ||||| ||| ||||| ||||||||||||| |
|
|
| T |
30286780 |
gctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgtcgtaactgcttcttcggatctctctttgcttggatttggtatcaatg |
30286879 |
T |
|
| Q |
737 |
ctgagaacaatcagagaaactttcttgcaggtatact |
773 |
Q |
| |
|
| ||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
30286880 |
cggagaacaatcaaaggaacttccttgctggtatact |
30286916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 30292150 - 30292246
Alignment:
| Q |
879 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaa |
975 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| || ||| ||||||| |
|
|
| T |
30292150 |
aaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30292246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 30304784 - 30304880
Alignment:
| Q |
879 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaa |
975 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| || ||| ||||||| |
|
|
| T |
30304784 |
aaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30304880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 620 - 775
Target Start/End: Original strand, 30299221 - 30299376
Alignment:
| Q |
620 |
aagtgcagaggtacaacgctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcaaatctcaatttcct |
719 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||| || || | |||||||||||||||| ||| | | | | |||||||| ||||| ||| || |
|
|
| T |
30299221 |
aagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgct |
30299320 |
T |
|
| Q |
720 |
tggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatactat |
775 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| ||||| |||||||||| ||||| |
|
|
| T |
30299321 |
tggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactat |
30299376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 718 - 773
Target Start/End: Original strand, 30291895 - 30291950
Alignment:
| Q |
718 |
cttggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatact |
773 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| | ||| ||||| |||||||| |
|
|
| T |
30291895 |
cttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatact |
30291950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 718 - 773
Target Start/End: Original strand, 30304529 - 30304584
Alignment:
| Q |
718 |
cttggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatact |
773 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| | ||| ||||| |||||||| |
|
|
| T |
30304529 |
cttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatact |
30304584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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