View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_11 (Length: 445)
Name: NF9703_low_11
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 60 - 435
Target Start/End: Complemental strand, 47179397 - 47179037
Alignment:
| Q |
60 |
tgtttgttagaatggtggttggagtagtggttgatgatctttgatgatgatgtgttagtgttaaaataaaaacgttaattataaaacctannnnnnn-cg |
158 |
Q |
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| T |
47179397 |
tgtttgttagaatggtggttggagtagtggttgatgatctttgatgatgatgtgttagcgttaaaataaaaacgttaattataaaacctattttttttcg |
47179298 |
T |
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| Q |
159 |
ttgagttttggtggaaaaatattt-gaaattgagtnnnnnnn-taaaacaactaaacctcatttaacttgaattgatttttgttagaaccaagttggaat |
256 |
Q |
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| T |
47179297 |
ttgagttttagtggaaaaatattttgaaattgagtaaaaaaaataaaacaactgaacctcatttaacttgaattgatttttgttagaaccaagttggaat |
47179198 |
T |
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| Q |
257 |
ttaaagaacaatgatctccaattttggttctgttgataccaaagtatataagagaacaattttttctctaacttgtgtttgaatgtgtagaaagtatttt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47179197 |
ttaaagaacaatgatctccaattttggttctgttgaaaccaaagtatataagagaacaattttttctcta------------------agaaagtatttt |
47179116 |
T |
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| Q |
357 |
tagtattgaaaccatgaaaatcggatacggctgtcataaaaacctgaagtcactgcagtcacctaatatctaccctatg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47179115 |
tagtattgaaaccatgaaaatcggatacggctgtcataaaaatctgaagtcactgcagtcacctaatatctaccctatg |
47179037 |
T |
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