View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_16 (Length: 419)
Name: NF9703_low_16
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 3017079 - 3016680
Alignment:
| Q |
1 |
attcaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017079 |
attcaagatccagcattaccacacataacctgacttttgcaactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagatt |
3016980 |
T |
|
| Q |
101 |
ttcaaaagaagatacaattaatctcaagacctcctgnnnnnnnnntgacaccatataactcaacagacataacttgttaagaacatgataatagaataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016979 |
ttcaaaagaagatacaattaatctcaagacctcctgaaagaaaa-tgacaccatataactcaacagacataacttgttaagaacatgataatagaataga |
3016881 |
T |
|
| Q |
201 |
attcaattaatgtacnnnnnnn-ttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcag |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3016880 |
attcaattaatgtacaaaaaaaattatcaagcacaccttcatttggtgatcattgtaaggaccatcaggtgcagtgattcttgttaactcactcaagcag |
3016781 |
T |
|
| Q |
300 |
gaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttag |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016780 |
gaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttag |
3016681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 3032815 - 3032438
Alignment:
| Q |
1 |
attcaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| || |||| || ||||| ||||||||| ||||||||||||| |
|
|
| T |
3032815 |
attcaagatccagcattaccacacatgacctgacttttgcaactgtttcgaggattaaagtcctctttgagtaccatcggcttgacttatcatgtagatt |
3032716 |
T |
|
| Q |
101 |
ttcaaaagaagatacaattaatctcaagacctcctgnnnnnnnnntgacaccatataactcaacagacataacttgttaagaacatgataatagaataga |
200 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||| ||||| |||| ||||||||||| ||| |||||||| |||||||||||||| | |
|
|
| T |
3032715 |
ttcaaatgaagatacaattaacctaaagacctcctgaaagaaaa-tgacaacataaaactcaacagatgtaatatgttaagagcatgataatagaattca |
3032617 |
T |
|
| Q |
201 |
attcaattaatgtacnnnnnnnttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcagg |
300 |
Q |
| |
|
||| | ||| | || || | || |||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3032616 |
attaatttatagcacaaaatcattgt---gcgcaccttcatttgaccatcatcataaggagcatcaggtgcagtgattcttgttatctcactgaagcagg |
3032520 |
T |
|
| Q |
301 |
aggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgc |
382 |
Q |
| |
|
||||||| || ||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
3032519 |
aggcaagagccactttgacatcagcatctgaatgctttataagtttatcagcaattaatgctttcaatgatggagacagtgc |
3032438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 48969908 - 48970027
Alignment:
| Q |
3 |
tcaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagatttt |
102 |
Q |
| |
|
||||| |||| ||||||||||||| | ||||| ||||| || ||||| |||| | |||| | |||||| | |||||| || ||||||||||||||| |
|
|
| T |
48969908 |
tcaaggtccaacattaccacacatgatctgacctttgcaacagtttcgaggactattctcctattctcatacgatcggcttaacttatcatgtagatttt |
48970007 |
T |
|
| Q |
103 |
caaaagaagatacaattaat |
122 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
48970008 |
caaatgaagatacaattaat |
48970027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University