View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_18 (Length: 398)
Name: NF9703_low_18
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 42165982 - 42165776
Alignment:
| Q |
1 |
taagaatcatataatatagatttttgtcaaaaataatataggttattccctaaataaaatataggttataaaacgtgtcgaaatattttcagaatatgac |
100 |
Q |
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| T |
42165982 |
taagaatcatataatataggtttttgtcaaaaataatataggttattccctaaataaaatataggttataaaacgtgtcgaaatattttcagaatatgac |
42165883 |
T |
|
| Q |
101 |
ataattttatttctataatgaagaagattatacgtttacaaattacaactccaaaactatatataaagcaccaagttttcagtggtctcatcacacactc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42165882 |
ataattttatttctataatg---aagattatacgtttaaaaattacaactcctaaactatatataaagcaccaagttttcagtggtctcatcacacactc |
42165786 |
T |
|
| Q |
201 |
actctcttac |
210 |
Q |
| |
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|||||||||| |
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| T |
42165785 |
actctcttac |
42165776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 42165753 - 42165615
Alignment:
| Q |
237 |
cctagggtagagaaaatggttggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaac |
336 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42165753 |
cctagggcagagaaaatggttggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaac |
42165654 |
T |
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| Q |
337 |
ttcttactcattgtcttaatattggcatatctgctctcc |
375 |
Q |
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| T |
42165653 |
ttcttactcattgtcttaatattggcatatttgctctcc |
42165615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 373
Target Start/End: Complemental strand, 5481266 - 5481145
Alignment:
| Q |
252 |
atggttggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttactcattgtc |
351 |
Q |
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|||| ||||||||| ||||||||||||||||| || ||||| || ||||||||||| | |||||||| ||||||||||||||||||||||||| | || |
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| T |
5481266 |
atgggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaacttcttactcgtgttc |
5481167 |
T |
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| Q |
352 |
ttaatattggcatatctgctct |
373 |
Q |
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| ||| ||||||| |||||||| |
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| T |
5481166 |
tcaatcttggcatctctgctct |
5481145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 388
Target Start/End: Original strand, 47170183 - 47170314
Alignment:
| Q |
257 |
tggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttactcattgtcttaat |
356 |
Q |
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|||||||||||||||||| ||||| || || |||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||| | ||||| ||| |
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| T |
47170183 |
tggttgggctattgctgttcatggcggtgcaggtgtggatcctaacctcccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgtctcaat |
47170282 |
T |
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| Q |
357 |
attggcatatctgctctccagtcctatgcttc |
388 |
Q |
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| || || |||||||||| ||| ||||||| |
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| T |
47170283 |
ctcggtatctctgctctccgatccaatgcttc |
47170314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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