View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_low_2 (Length: 708)

Name: NF9703_low_2
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_low_2
NF9703_low_2
[»] chr5 (15 HSPs)
chr5 (336-708)||(1580634-1581006)
chr5 (336-708)||(1603809-1604181)
chr5 (135-331)||(1586573-1586769)
chr5 (135-320)||(1580463-1580648)
chr5 (135-320)||(1604167-1604352)
chr5 (270-665)||(1590760-1591155)
chr5 (393-665)||(1587191-1587463)
chr5 (310-350)||(1586775-1586815)
chr5 (309-350)||(1586804-1586845)
chr5 (310-350)||(1586889-1586929)
chr5 (310-350)||(1586919-1586959)
chr5 (310-350)||(1587030-1587070)
chr5 (19-50)||(1580343-1580374)
chr5 (19-50)||(1586457-1586488)
chr5 (19-50)||(1604441-1604472)
[»] chr3 (2 HSPs)
chr3 (392-665)||(19270343-19270616)
chr3 (270-350)||(19270870-19270950)
[»] chr7 (2 HSPs)
chr7 (500-666)||(39616012-39616178)
chr7 (365-484)||(39616233-39616349)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 336 - 708
Target Start/End: Original strand, 1580634 - 1581006
Alignment:
Q  336 ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1580634 ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag 1580733  T
Q  436 catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  1580734 catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata 1580833  T
Q  536 ttgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc 635  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580834 ttgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc 1580933  T
Q  636 aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580934 aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt 1581006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 336 - 708
Target Start/End: Complemental strand, 1604181 - 1603809
Alignment:
Q  336 ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1604181 ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag 1604082  T
Q  436 catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  1604081 catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata 1603982  T
Q  536 ttgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc 635  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603981 ttgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc 1603882  T
Q  636 aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603881 aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt 1603809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 135 - 331
Target Start/End: Original strand, 1586573 - 1586769
Alignment:
Q  135 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586573 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 1586672  T
Q  235 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagat 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586673 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagat 1586769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 1580463 - 1580648
Alignment:
Q  135 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580463 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 1580562  T
Q  235 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa 320  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  1580563 gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa 1580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 135 - 320
Target Start/End: Complemental strand, 1604352 - 1604167
Alignment:
Q  135 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604352 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 1604253  T
Q  235 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa 320  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  1604252 gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa 1604167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 270 - 665
Target Start/End: Complemental strand, 1591155 - 1590760
Alignment:
Q  270 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaacaaaattgcctcttaatattcc 369  Q
    ||||||||||| ||||| ||||| || |||||| | ||  |||||||||||||||| ||||||||||| ||||||||||||     |    | || |||     
T  1591155 aagagttagcagaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcg 1591056  T
Q  370 acaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgata-aggcgaaaagaagagtgaaacc 468  Q
     |||   |||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||| |  || |  | ||| ||||||| || |||||    
T  1591055 ccaagaaacaatggaaggagatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagca-gcatgttttatgcggaaagaagtgttaaacc 1590957  T
Q  469 aaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagag 568  Q
    ||||| ||||||||||||   |||       || ||||||||||| |||||||||||||| ||||||||||||||| | || |||| |||||||||||||    
T  1590956 aaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagag 1590857  T
Q  569 ttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaag 665  Q
    || ||||| | |||||||||| |||||||||||||  |||||| ||  || ||||||||  |  |||||| ||||||||||||| | ||||||||||    
T  1590856 tttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcggatctcagggatgaccaaaatcgtcttttaatgccgcttaaagaag 1590760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 393 - 665
Target Start/End: Original strand, 1587191 - 1587463
Alignment:
Q  393 tagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagca---tggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggt 489  Q
    |||||||||| ||||||||||||||||||||||||||||||||||   || || ||  ||   |||||||||| |||||||||| ||||||||||||       
T  1587191 tagtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcagcatgtcttatgtgg---aaagaagagttaaaccaaagaccacgaagaagatcaa 1587287  T
Q  490 accnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaa 589  Q
    |||       || ||||||||||| |||||||||||||| ||||||||||||||| | || |||| ||||||||||||||| ||||| | ||||||||||    
T  1587288 accaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaa 1587387  T
Q  590 catatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaag 665  Q
     |||||||||||||  |||||| ||  |||||||||||  |  |||||| ||||||||||||| | ||||||||||    
T  1587388 aatatcatgtgtaaaaaattgtctgcgtcagatctcagggatgaccaaaatcgtcttttaatgccgcttaaagaag 1587463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1586775 - 1586815
Alignment:
Q  310 ccaagaaacaatggaaggagatcatgttcgccaagaaacaa 350  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1586775 ccaagaaacaatggaaggagatcatgttcgccaagaaacaa 1586815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 1586804 - 1586845
Alignment:
Q  309 gccaagaaacaatggaaggagatcatgttcgccaagaaacaa 350  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  1586804 gccaagaaacaacggaaggagatcatgttcgccaagaaacaa 1586845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1586889 - 1586929
Alignment:
Q  310 ccaagaaacaatggaaggagatcatgttcgccaagaaacaa 350  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  1586889 ccaagaaacaatggaaggagatcatgttcaccaagaaacaa 1586929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1586919 - 1586959
Alignment:
Q  310 ccaagaaacaatggaaggagatcatgttcgccaagaaacaa 350  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1586919 ccaagaaacaacggaaggagatcatgttcgccaagaaacaa 1586959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1587030 - 1587070
Alignment:
Q  310 ccaagaaacaatggaaggagatcatgttcgccaagaaacaa 350  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  1587030 ccaagaaacaatagaaggagatcatgttcgccaaaaaacaa 1587070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 1580343 - 1580374
Alignment:
Q  19 agaagccacacacattctcaactcagcacaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  1580343 agaagccacacacattctcaactcagcacaac 1580374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 1586457 - 1586488
Alignment:
Q  19 agaagccacacacattctcaactcagcacaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  1586457 agaagccacacacattctcaactcagcacaac 1586488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 1604472 - 1604441
Alignment:
Q  19 agaagccacacacattctcaactcagcacaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  1604472 agaagccacacacattctcaactcagcacaac 1604441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 392 - 665
Target Start/End: Complemental strand, 19270616 - 19270343
Alignment:
Q  392 gtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag---catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatgg 488  Q
    ||||||||||| |||||||||||| |||||||||||||||||||   |||| || |    ||  |||||||||||||||||||||||||||||||||||     
T  19270616 gtagtgaataaaaagaaaaggtgttgctcaagtgatgaaggtagaagcatgtctcac---gcagaaagaagagtgaaaccaaagagcacgaagaagatga 19270520  T
Q  489 taccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaa 588  Q
     |||       |||||||||||||| |||||||| ||||| ||||||||||||||| |  | |||| ||||||||||||||||||||| | |||||||||    
T  19270519 aaccaaaaaaacaagataaggaaaatttgtcatctcctccaccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaa 19270420  T
Q  589 acatatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaag 665  Q
    | |||||||| ||||  |||||||||  ||| ||||||   |  |||||| |||||| ||||||||  |||||||||    
T  19270419 atatatcatgggtaaaaaattgtttgcatcaaatctcaaagatgaccaaaatcgtctattaatgtcgattaaagaag 19270343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 19270950 - 19270870
Alignment:
Q  270 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaacaa 350  Q
    ||||||| ||||||||| ||||| || |||||| | ||  ||||||||||| |||| ||||||||||||||||||||||||    
T  19270950 aagagttggcacaaataaagaaactctatcaacgtgttctccaagaaacaaaggaacgagatcatgttcgccaagaaacaa 19270870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 500 - 666
Target Start/End: Complemental strand, 39616178 - 39616012
Alignment:
Q  500 caagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgt 599  Q
    ||||||||| |||| ||| | | ||||||||||||||| |||||| ||||| ||| ||||||||| ||||||||||| | |||||||| | |||||||||    
T  39616178 caagataagaaaaatttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgt 39616079  T
Q  600 gtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaaga 666  Q
      ||| |||||||||  |||||| ||  | ||  ||||||||||||||||||| |||||||||||||    
T  39616078 caaagaaattgtttgcgtcagatatcgatgaaggccaaagtcgtcttttaatgccacttaaagaaga 39616012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 39616349 - 39616233
Alignment:
Q  365 attccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtga 464  Q
    |||||||||| |||| || |||||||||||| |||||  ||||||||||||||| || ||||||||| ||||||| || ||   ||| ||||||||  ||    
T  39616349 attccacaaaacacagtggaaggagaagtagcgaataccaagaaaaggtgtcgcccatgtgatgaagttagcatgtcttat---gcggaaagaagaacga 39616253  T
Q  465 aaccaaagagcacgaagaag 484  Q
    ||||||||| ||||||||||    
T  39616252 aaccaaagaccacgaagaag 39616233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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