View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_20 (Length: 397)
Name: NF9703_low_20
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_20 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 25 - 397
Target Start/End: Original strand, 1580634 - 1581006
Alignment:
| Q |
25 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580634 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
1580733 |
T |
|
| Q |
125 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1580734 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata |
1580833 |
T |
|
| Q |
225 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580834 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc |
1580933 |
T |
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| Q |
325 |
aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580934 |
aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt |
1581006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 25 - 397
Target Start/End: Complemental strand, 1604181 - 1603809
Alignment:
| Q |
25 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1604181 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
1604082 |
T |
|
| Q |
125 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1604081 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata |
1603982 |
T |
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| Q |
225 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc |
324 |
Q |
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| T |
1603981 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacacc |
1603882 |
T |
|
| Q |
325 |
aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603881 |
aaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttt |
1603809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 354
Target Start/End: Original strand, 1587191 - 1587463
Alignment:
| Q |
82 |
tagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagca---tggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggt |
178 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| || || || || |||||||||| |||||||||| |||||||||||| |
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| T |
1587191 |
tagtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcagcatgtcttatgtgg---aaagaagagttaaaccaaagaccacgaagaagatcaa |
1587287 |
T |
|
| Q |
179 |
accnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaa |
278 |
Q |
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||| || ||||||||||| |||||||||||||| ||||||||||||||| | || |||| ||||||||||||||| ||||| | |||||||||| |
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| T |
1587288 |
accaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaa |
1587387 |
T |
|
| Q |
279 |
catatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaag |
354 |
Q |
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||||||||||||| |||||| || ||||||||||| | |||||| ||||||||||||| | |||||||||| |
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| T |
1587388 |
aatatcatgtgtaaaaaattgtctgcgtcagatctcagggatgaccaaaatcgtcttttaatgccgcttaaagaag |
1587463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 66 - 354
Target Start/End: Complemental strand, 1591048 - 1590760
Alignment:
| Q |
66 |
acaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgata-aggcgaaaagaagagtgaaaccaaagagc |
164 |
Q |
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|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||| | || | | ||| ||||||| || |||||||||| | |
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| T |
1591048 |
acaatggaaggagatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagca-gcatgttttatgcggaaagaagtgttaaaccaaagacc |
1590950 |
T |
|
| Q |
165 |
acgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatg |
264 |
Q |
| |
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||||||||||| ||| || ||||||||||| |||||||||||||| ||||||||||||||| | || |||| ||||||||||||||| |||| |
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| T |
1590949 |
acgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatg |
1590850 |
T |
|
| Q |
265 |
gaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaag |
354 |
Q |
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| | |||||||||| ||||||||||||| |||||| || || |||||||| | |||||| ||||||||||||| | |||||||||| |
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| T |
1590849 |
gcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcggatctcagggatgaccaaaatcgtcttttaatgccgcttaaagaag |
1590760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 81 - 354
Target Start/End: Complemental strand, 19270616 - 19270343
Alignment:
| Q |
81 |
gtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag---catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatgg |
177 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||| |||| || | || ||||||||||||||||||||||||||||||||||| |
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| T |
19270616 |
gtagtgaataaaaagaaaaggtgttgctcaagtgatgaaggtagaagcatgtctcac---gcagaaagaagagtgaaaccaaagagcacgaagaagatga |
19270520 |
T |
|
| Q |
178 |
taccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaa |
277 |
Q |
| |
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||| |||||||||||||| |||||||| ||||| ||||||||||||||| | | |||| ||||||||||||||||||||| | ||||||||| |
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| T |
19270519 |
aaccaaaaaaacaagataaggaaaatttgtcatctcctccaccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaa |
19270420 |
T |
|
| Q |
278 |
acatatcatgtgtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaag |
354 |
Q |
| |
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| |||||||| |||| ||||||||| ||| |||||| | |||||| |||||| |||||||| ||||||||| |
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| T |
19270419 |
atatatcatgggtaaaaaattgtttgcatcaaatctcaaagatgaccaaaatcgtctattaatgtcgattaaagaag |
19270343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 189 - 355
Target Start/End: Complemental strand, 39616178 - 39616012
Alignment:
| Q |
189 |
caagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgt |
288 |
Q |
| |
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||||||||| |||| ||| | | ||||||||||||||| |||||| ||||| ||| ||||||||| ||||||||||| | |||||||| | ||||||||| |
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| T |
39616178 |
caagataagaaaaatttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgt |
39616079 |
T |
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| Q |
289 |
gtaaggaattgtttgattcagatctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaaga |
355 |
Q |
| |
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||| ||||||||| |||||| || | || ||||||||||||||||||| ||||||||||||| |
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| T |
39616078 |
caaagaaattgtttgcgtcagatatcgatgaaggccaaagtcgtcttttaatgccacttaaagaaga |
39616012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 39616349 - 39616233
Alignment:
| Q |
54 |
attccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtga |
153 |
Q |
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|||||||||| |||| || |||||||||||| ||||| ||||||||||||||| || ||||||||| ||||||| || || ||| |||||||| || |
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| T |
39616349 |
attccacaaaacacagtggaaggagaagtagcgaataccaagaaaaggtgtcgcccatgtgatgaagttagcatgtcttat---gcggaaagaagaacga |
39616253 |
T |
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| Q |
154 |
aaccaaagagcacgaagaag |
173 |
Q |
| |
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||||||||| |||||||||| |
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| T |
39616252 |
aaccaaagaccacgaagaag |
39616233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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