View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_21 (Length: 394)
Name: NF9703_low_21
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_21 |
 | |
|
| [»] scaffold0175 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 29276380 - 29276604
Alignment:
| Q |
1 |
ttttgaagtttgtcctgttacaggcccatagctatagtatttacttttacaaatgattcatgttaacacaaacaacctatagtcactactgttctattaa |
100 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
29276380 |
ttttgaagtttgtcgtgttacatgctcatagctatagtatttacttttacaaatgattcatgttaacacaaacaacctatagtcaccacttttctattaa |
29276479 |
T |
|
| Q |
101 |
gaatgaatgtttcaagaatgaatcacattatttannnnnnnncttgacaaaaatatactaattcttggc-attttctgtcattatcaaaatccatggaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||| | | ||||||||||||||||||| |
|
|
| T |
29276480 |
gaatgaatgtttcaagaatgaatcacattatttattttttg--ttgac--aaatatgctaattcttggctttttttttttgttatcaaaatccatggaat |
29276575 |
T |
|
| Q |
200 |
atttgatttcaaacaatgaacacatttca |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
29276576 |
atttgatttcaaacaatgtacacatttca |
29276604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 29276664 - 29276727
Alignment:
| Q |
306 |
tgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa |
369 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
29276664 |
tgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa |
29276727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 29276673 - 29276706
Alignment:
| Q |
251 |
tttaagtttaagctaagatcataattatctaaat |
284 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
29276673 |
tttaagtttaagctaagatcataattacctaaat |
29276706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27869 - 27647
Alignment:
| Q |
1 |
ttttgaagtttgtcctgttacaggcccatagctatagtatttacttttacaaatgattcatgttaacacaaacaacctatagtcactactgttctattaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |
|
|
| T |
27869 |
ttttgaagttcgtcctgttacaggctcatagctatagtatttaattttacaaatgattcatgttaacacaaacaacctatagtcaccact-ttttattaa |
27771 |
T |
|
| Q |
101 |
gaatgaatgtttcaagaatgaatcacattatttannnnnnnncttgacaaaaatatactaattcttggcattttctgtcattatcaaaatccatggaata |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||| ||| ||||||||||||||| |||| |
|
|
| T |
27770 |
gaatgaatatttcaagaatgaatcacactattta--ttttttcttgac--aaatatactaattcttgacatttattgttgttatcaaaatccatgaaata |
27675 |
T |
|
| Q |
201 |
tttgatttcaaacaatgaacacatttca |
228 |
Q |
| |
|
||| ||||||||||||| |||||||||| |
|
|
| T |
27674 |
ttttatttcaaacaatgtacacatttca |
27647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 27574 - 27528
Alignment:
| Q |
323 |
taagctaagatcataattacctaaatgtctcatatacttaccgctaa |
369 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
27574 |
taaggtaagatcataactacctaaatgtctcaaatacttactgctaa |
27528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 55858220 - 55857989
Alignment:
| Q |
1 |
ttttgaagtttgtcctgttacaggcccatagctatagtatttacttttacaaatgattcatgttaacacaaacaacctatagtcactactgttctattaa |
100 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
55858220 |
ttttgaagtttgtcgtgttacatgctcatagctatagtatttacttttacaaatgattcatgttaacacaaacaacctatagtcaccatttttctattaa |
55858121 |
T |
|
| Q |
101 |
gaatgaatgtttcaagaatgaatcacattatttannnnnnnncttgacaaaaatatactaattcttggcatt--------ttctgtcattatcaaaatcc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| || || | | |||||||||||| |
|
|
| T |
55858120 |
gaatgaatgtttcaagaatgaatcacattatttattttttg--ttgac--aaatatgctaattcttggcttttatttttatttttttgttatcaaaatcc |
55858025 |
T |
|
| Q |
193 |
atggaatatttgatttcaaacaatgaacacatttca |
228 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55858024 |
atggaatatttgatttcaaacaatgtacacatttca |
55857989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 55857932 - 55857866
Alignment:
| Q |
303 |
ggctgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa |
369 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
55857932 |
ggctgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa |
55857866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 55857920 - 55857887
Alignment:
| Q |
251 |
tttaagtttaagctaagatcataattatctaaat |
284 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
55857920 |
tttaagtttaagctaagatcataattacctaaat |
55857887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University