View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_22 (Length: 386)
Name: NF9703_low_22
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 3550408 - 3550034
Alignment:
| Q |
5 |
catcttctactcttgatagaactgtaaaggctaaactttccaatattcttgaatagctttcaagaatagcttgccctacatcctgccataataaataata |
104 |
Q |
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| T |
3550408 |
catcttctactcttgatagaactgtaaaggctaaactttccaatattcttgaatagctttcaagaacagcttgccctacatcctgccataataaataata |
3550309 |
T |
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| Q |
105 |
cttgttagaacagaaaatccggctcttaagaaaacgtatttataaacacaaacaaaaagtgcggttgtgcctacatctccgataatacttgttatattaa |
204 |
Q |
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| T |
3550308 |
cttgttagaacagaaaatccggctcttaagaaaacgtattaataaacacaaacaaaaagtgtggttgtgcctacatctccgataatacttgttatattaa |
3550209 |
T |
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| Q |
205 |
tagtatgattttattttaagaattgccaaaagtttatgcaacattgtaattgaagagatcaagatgcatacaggaaatattcttaccccgttgaattgga |
304 |
Q |
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| T |
3550208 |
tagtatgattttattttgagaattgccaaaagtttatgcaacattgtaattgaagagatcaagatgcgtgcaggaaatattcttaccccgttgaattgga |
3550109 |
T |
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| Q |
305 |
ttttgcttatatccaatgaagattgtggaagtccgggaaaccgatgtttcaagagaagtaagatggtctctgctc |
379 |
Q |
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| T |
3550108 |
ttttgcttatatccaatgaagattgtggaagtccaggaaaccgatgtttcaagagaagtaagatggtttctgctc |
3550034 |
T |
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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 43810874 - 43810959
Alignment:
| Q |
5 |
catcttctactcttgatagaactgtaaaggctaaactttccaatattcttgaatagctttcaagaatagcttgccctacatcctgc |
90 |
Q |
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| T |
43810874 |
catcatctattcttgaaagtactgtgaaggccaaactttctaatattcttgaatagctttcaagaacggcgtgccctacatcctgc |
43810959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 43811280 - 43811330
Alignment:
| Q |
284 |
ttcttaccccgttgaattggattttgcttatatccaatgaagattgtggaa |
334 |
Q |
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| T |
43811280 |
ttcttaccctgttgaattggattttgcttatatccaatgaagattgaggaa |
43811330 |
T |
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